miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 47233 0.66 0.472868
Target:  5'- -gGCCUCGGCCaGGugcCGGGCgacuugaacGAUCuGCCc -3'
miRNA:   3'- ugCGGAGCCGG-CU---GCUCGa--------CUAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 46769 0.7 0.29426
Target:  5'- aGCGaCUcgCGGuUCGGCGAGCUGAUCGa- -3'
miRNA:   3'- -UGC-GGa-GCC-GGCUGCUCGACUAGCgg -5'
12892 3' -59.7 NC_003387.1 + 46425 0.77 0.090311
Target:  5'- -gGCCUCGGCCG-CGGGC-GA-CGCCu -3'
miRNA:   3'- ugCGGAGCCGGCuGCUCGaCUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 46167 0.68 0.398221
Target:  5'- cAUGUCggCGGCCGucuUGGGCUcGUCGUCg -3'
miRNA:   3'- -UGCGGa-GCCGGCu--GCUCGAcUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 45880 0.79 0.066511
Target:  5'- cGCGCCgCGGCCGAgCGGGC-GAUCGaCCu -3'
miRNA:   3'- -UGCGGaGCCGGCU-GCUCGaCUAGC-GG- -5'
12892 3' -59.7 NC_003387.1 + 45717 0.66 0.482694
Target:  5'- gGCGCCaggCGGCCGAUcuucGCc--UCGCCg -3'
miRNA:   3'- -UGCGGa--GCCGGCUGcu--CGacuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 45645 0.79 0.068206
Target:  5'- gGCuCCUCGGCCgugccGACGAGCUGGcggcggaUCGCCu -3'
miRNA:   3'- -UGcGGAGCCGG-----CUGCUCGACU-------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 45572 0.69 0.342619
Target:  5'- uCGUCggcaCGGCCGAgGAgccgggccucgcgugGCUGAUCGaCCg -3'
miRNA:   3'- uGCGGa---GCCGGCUgCU---------------CGACUAGC-GG- -5'
12892 3' -59.7 NC_003387.1 + 45393 0.76 0.106508
Target:  5'- uGCGCC-CGGCCGccCGAGCcGAUCGUg -3'
miRNA:   3'- -UGCGGaGCCGGCu-GCUCGaCUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 45290 0.66 0.482694
Target:  5'- cACGCCacgaUCGGCCG-CGGGUcGAacggGCCg -3'
miRNA:   3'- -UGCGG----AGCCGGCuGCUCGaCUag--CGG- -5'
12892 3' -59.7 NC_003387.1 + 45054 0.7 0.266832
Target:  5'- cCGCCUCGGCgGcaGCG-GC-GAUCGCg -3'
miRNA:   3'- uGCGGAGCCGgC--UGCuCGaCUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 44683 0.72 0.207313
Target:  5'- cGCGCCaCGGcCCGACGGcgucGCUcgacuccuugagGAUCGCCu -3'
miRNA:   3'- -UGCGGaGCC-GGCUGCU----CGA------------CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 44651 0.72 0.196879
Target:  5'- -gGCCUCggcgauccuGGCCGAgGGGCUGccggugcUCGCCa -3'
miRNA:   3'- ugCGGAG---------CCGGCUgCUCGACu------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 44610 0.67 0.407136
Target:  5'- gACGCCgUCgGGCCGuggcGCGAGCguGUgGCCc -3'
miRNA:   3'- -UGCGG-AG-CCGGC----UGCUCGacUAgCGG- -5'
12892 3' -59.7 NC_003387.1 + 44513 0.73 0.182089
Target:  5'- aGCGCCUCGugcgcGUCGGCGGGCaGcAUCGCg -3'
miRNA:   3'- -UGCGGAGC-----CGGCUGCUCGaC-UAGCGg -5'
12892 3' -59.7 NC_003387.1 + 44475 0.67 0.434617
Target:  5'- -aGCgUCaGCCGcgGCGAGCU--UCGCCu -3'
miRNA:   3'- ugCGgAGcCGGC--UGCUCGAcuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 44407 0.68 0.360516
Target:  5'- uCGCCgCGGCUGACGcugugcucgcgauGCUGccCGCCg -3'
miRNA:   3'- uGCGGaGCCGGCUGCu------------CGACuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 44020 0.66 0.482694
Target:  5'- uCGCCgugcggCGGCgGGCGAcCUGAUUcCCg -3'
miRNA:   3'- uGCGGa-----GCCGgCUGCUcGACUAGcGG- -5'
12892 3' -59.7 NC_003387.1 + 43913 0.68 0.389432
Target:  5'- -gGCCaaguUCGGgCG-CGAGCUGAgcgggaaucaggUCGCCc -3'
miRNA:   3'- ugCGG----AGCCgGCuGCUCGACU------------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 43734 0.7 0.301452
Target:  5'- uCGCCcuccUCGG-CGACuAGCUGGUgCGCCa -3'
miRNA:   3'- uGCGG----AGCCgGCUGcUCGACUA-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.