miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 43667 0.68 0.379912
Target:  5'- uCGCCgaggaGGgCGACGcgauccuGGCgugGAUCGCCg -3'
miRNA:   3'- uGCGGag---CCgGCUGC-------UCGa--CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 43420 0.66 0.463143
Target:  5'- gUGCCgcuccCGGCCcGCGAGCagGAaaUUGCCc -3'
miRNA:   3'- uGCGGa----GCCGGcUGCUCGa-CU--AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 42548 0.67 0.416176
Target:  5'- gACGCCga-GCUGGCGAGCgaGAUUGgCg -3'
miRNA:   3'- -UGCGGagcCGGCUGCUCGa-CUAGCgG- -5'
12892 3' -59.7 NC_003387.1 + 42016 0.68 0.389432
Target:  5'- cCGCCU-GGCCG-UGA--UGGUCGCCg -3'
miRNA:   3'- uGCGGAgCCGGCuGCUcgACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 41811 0.71 0.247026
Target:  5'- cACGCCU-GGCagaucauCGACGAGCUGAgcauccuggUCgGCCa -3'
miRNA:   3'- -UGCGGAgCCG-------GCUGCUCGACU---------AG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 41766 0.7 0.301452
Target:  5'- gGCGCCgCGacGCCGGguCGGGUUGA-CGCCg -3'
miRNA:   3'- -UGCGGaGC--CGGCU--GCUCGACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 41466 0.67 0.453523
Target:  5'- uGCGCCUCGGUCGcCcGGCgc-UCgGCCu -3'
miRNA:   3'- -UGCGGAGCCGGCuGcUCGacuAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 41363 0.66 0.502636
Target:  5'- aAUGCaa-GGCCGAcgcCGAGCgUGAggccgagCGCCg -3'
miRNA:   3'- -UGCGgagCCGGCU---GCUCG-ACUa------GCGG- -5'
12892 3' -59.7 NC_003387.1 + 41143 0.69 0.345021
Target:  5'- cGCGCCgaCGGCCGcugcgagugucaggGCGAGUgcggccGGUCGCa -3'
miRNA:   3'- -UGCGGa-GCCGGC--------------UGCUCGa-----CUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 40928 0.82 0.037828
Target:  5'- -gGCCUgaUGGaCGGCGAGCUGGUCGCCa -3'
miRNA:   3'- ugCGGA--GCCgGCUGCUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 40621 0.71 0.253911
Target:  5'- aACGCCUCGGgggucaCGcccuCGGGCaGGUCGCUg -3'
miRNA:   3'- -UGCGGAGCCg-----GCu---GCUCGaCUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 40513 0.7 0.27349
Target:  5'- gGCGCUgucaGGCCGGgcCGGGCcGGUuCGCCg -3'
miRNA:   3'- -UGCGGag--CCGGCU--GCUCGaCUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 40338 0.68 0.401772
Target:  5'- cGCGCagaUCGGUcugcacggucaCGACGAGCUGcaugcgggggcugccGUCGUCc -3'
miRNA:   3'- -UGCGg--AGCCG-----------GCUGCUCGAC---------------UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 39832 0.86 0.021374
Target:  5'- uGCGCaC-CGGUCGGCGAGCUGGUCGUCg -3'
miRNA:   3'- -UGCG-GaGCCGGCUGCUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 39594 0.81 0.048815
Target:  5'- uGCGCaccagcgaGGCCGACGAGUgGAUCGCCg -3'
miRNA:   3'- -UGCGgag-----CCGGCUGCUCGaCUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 39384 0.68 0.398221
Target:  5'- cACGCCcucgccguugUCGGCCGG-GGGCUugccGUCGUCg -3'
miRNA:   3'- -UGCGG----------AGCCGGCUgCUCGAc---UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 39242 0.69 0.334698
Target:  5'- gGCGCCgggcgaGGCCGucgaguucgaccucgGCGAGCUGGgcaaGCUg -3'
miRNA:   3'- -UGCGGag----CCGGC---------------UGCUCGACUag--CGG- -5'
12892 3' -59.7 NC_003387.1 + 38701 0.73 0.191836
Target:  5'- aGCGCCagcgCGGCCuGCGGGCcGAacagCGCCu -3'
miRNA:   3'- -UGCGGa---GCCGGcUGCUCGaCUa---GCGG- -5'
12892 3' -59.7 NC_003387.1 + 38046 0.68 0.380771
Target:  5'- gGCGCCccgaUCGGgCGGUG-GCUGAgcgagCGCCg -3'
miRNA:   3'- -UGCGG----AGCCgGCUGCuCGACUa----GCGG- -5'
12892 3' -59.7 NC_003387.1 + 37998 0.66 0.482694
Target:  5'- gUGCC-CGGCgGugccgagccacGCGGGCagcgGGUCGCCc -3'
miRNA:   3'- uGCGGaGCCGgC-----------UGCUCGa---CUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.