miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 37833 0.7 0.301452
Target:  5'- cACGCCUUgaGGUCGcCGAGCaGcUUGCCg -3'
miRNA:   3'- -UGCGGAG--CCGGCuGCUCGaCuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 37367 0.69 0.347436
Target:  5'- gACGaCCgc-GCCGACGAGCg---CGCCa -3'
miRNA:   3'- -UGC-GGagcCGGCUGCUCGacuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 37226 0.68 0.398221
Target:  5'- aACGCCgccgUGGgcgacgauuUCGACGAGCUGAaCGUg -3'
miRNA:   3'- -UGCGGa---GCC---------GGCUGCUCGACUaGCGg -5'
12892 3' -59.7 NC_003387.1 + 37046 0.67 0.452567
Target:  5'- gGCGacaCUgaCGGCCuGGCGAGCgGGcauucguUCGCCg -3'
miRNA:   3'- -UGCg--GA--GCCGG-CUGCUCGaCU-------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 36962 0.67 0.453523
Target:  5'- gACGCCgacgCGGUgcccguCGGCGAGCacaAUCGUCu -3'
miRNA:   3'- -UGCGGa---GCCG------GCUGCUCGac-UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 36854 0.68 0.398221
Target:  5'- uGCGCgUCGGCCagcgcCGAGUgccGUCGCUg -3'
miRNA:   3'- -UGCGgAGCCGGcu---GCUCGac-UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 36739 0.68 0.37224
Target:  5'- -gGCCa-GGUCGGCGAGCcGGUgaUGCCa -3'
miRNA:   3'- ugCGGagCCGGCUGCUCGaCUA--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 36733 0.66 0.472868
Target:  5'- -gGCCUCGacGCCGucuGCGAGCgccUGggCGUCa -3'
miRNA:   3'- ugCGGAGC--CGGC---UGCUCG---ACuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 36536 0.72 0.196369
Target:  5'- uUGCCaUCGGCUgcgccugGGCGAGCUGcUCGCg -3'
miRNA:   3'- uGCGG-AGCCGG-------CUGCUCGACuAGCGg -5'
12892 3' -59.7 NC_003387.1 + 36211 0.68 0.37224
Target:  5'- gGCGCCUCGGCguaauCGAGgUcGUCGCa -3'
miRNA:   3'- -UGCGGAGCCGgcu--GCUCgAcUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 35719 0.67 0.434617
Target:  5'- -gGCCUgCcGCUGAcCGAGCUGGacgaaaUCGCCc -3'
miRNA:   3'- ugCGGA-GcCGGCU-GCUCGACU------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 35696 0.7 0.266832
Target:  5'- cCGCCUCGGCgGGCuccucgGGGCcguaggcGAUCGCUg -3'
miRNA:   3'- uGCGGAGCCGgCUG------CUCGa------CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 35633 0.67 0.407136
Target:  5'- cCGCCgaggCGGCCgGGCGGGCac-UgGCCg -3'
miRNA:   3'- uGCGGa---GCCGG-CUGCUCGacuAgCGG- -5'
12892 3' -59.7 NC_003387.1 + 35581 0.7 0.28028
Target:  5'- gGCGCCcUGGCCGAgcugguCGAcacaGC-GAUCGCCu -3'
miRNA:   3'- -UGCGGaGCCGGCU------GCU----CGaCUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 35351 0.67 0.434617
Target:  5'- gACGCCgagacaGGCuCGcCGcacCUGAUCGCCg -3'
miRNA:   3'- -UGCGGag----CCG-GCuGCuc-GACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 35243 0.67 0.452567
Target:  5'- gGCGCC-CGcaaguacGCCGACGAcaaCUGG-CGCCg -3'
miRNA:   3'- -UGCGGaGC-------CGGCUGCUc--GACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 34614 0.66 0.472868
Target:  5'- gACGUCgucgagCgGGUCGACGGGCagcccgagGAUCGCg -3'
miRNA:   3'- -UGCGGa-----G-CCGGCUGCUCGa-------CUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 34493 0.66 0.463143
Target:  5'- uGCGCaggaauGCCGGCGAgugcgucgucGCUGGUCGCg -3'
miRNA:   3'- -UGCGgagc--CGGCUGCU----------CGACUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 34241 0.76 0.10946
Target:  5'- gGC-CCUCGGggcgcUCGACcGGCUGAUCGCCg -3'
miRNA:   3'- -UGcGGAGCC-----GGCUGcUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 33534 0.7 0.29426
Target:  5'- gGCGaCUUCGGCCGccuugcGCGAGgUGGUgGCg -3'
miRNA:   3'- -UGC-GGAGCCGGC------UGCUCgACUAgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.