miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 33478 0.68 0.37224
Target:  5'- uCGCCgaggCGGUCGGCGcccGC-GAUCGCg -3'
miRNA:   3'- uGCGGa---GCCGGCUGCu--CGaCUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 33071 0.67 0.434617
Target:  5'- cGCGCCaaGcGCCG-CGAGCguaaccgcGUCGCCc -3'
miRNA:   3'- -UGCGGagC-CGGCuGCUCGac------UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 32659 0.66 0.463143
Target:  5'- aACGCUcacGCaCGcCGAGCUGAaccUCGCCg -3'
miRNA:   3'- -UGCGGagcCG-GCuGCUCGACU---AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 32328 0.67 0.416176
Target:  5'- -gGCCUCGG-CGACGgccaGGC-GGUCgGCCa -3'
miRNA:   3'- ugCGGAGCCgGCUGC----UCGaCUAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 32321 0.7 0.29426
Target:  5'- gAUGCCcgacaUGGaCCGcuGCG-GCUGAUCGCCg -3'
miRNA:   3'- -UGCGGa----GCC-GGC--UGCuCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 32225 0.76 0.113723
Target:  5'- cGCGCUgcgCGaGCgCGACGAGCUGGccgaccgccuggccgUCGCCg -3'
miRNA:   3'- -UGCGGa--GC-CG-GCUGCUCGACU---------------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 32159 0.75 0.128842
Target:  5'- cCGCCUgcaGGCacagauuGACGAGCUGAcCGCCg -3'
miRNA:   3'- uGCGGAg--CCGg------CUGCUCGACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 30563 0.66 0.469939
Target:  5'- cCGCCgCGGCCGguacgcgccgugccGCGAGUgcgGGUaCGUCg -3'
miRNA:   3'- uGCGGaGCCGGC--------------UGCUCGa--CUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 30502 0.66 0.463143
Target:  5'- cCGCCUCGGCCucgguuucacccGAC-AGCUcGGgcaGCCa -3'
miRNA:   3'- uGCGGAGCCGG------------CUGcUCGA-CUag-CGG- -5'
12892 3' -59.7 NC_003387.1 + 30297 0.67 0.444014
Target:  5'- cGCGCCUgGGaCGACGcgcauuaccagGGCUGGcggCGCUu -3'
miRNA:   3'- -UGCGGAgCCgGCUGC-----------UCGACUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 30181 0.69 0.347436
Target:  5'- uCGCCUCGGgcaaggagcagUCGcCGAGCcGGUaCGCCg -3'
miRNA:   3'- uGCGGAGCC-----------GGCuGCUCGaCUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 29870 0.67 0.453523
Target:  5'- gACGCUaguccucgaUCGGCauGCGgucacgccguAGCUGAUCGUCa -3'
miRNA:   3'- -UGCGG---------AGCCGgcUGC----------UCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 29728 0.69 0.339435
Target:  5'- -gGCCgacgaCGGCagcuacgcgGGCGAGCUGGaCGCCg -3'
miRNA:   3'- ugCGGa----GCCGg--------CUGCUCGACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 29471 0.74 0.155437
Target:  5'- uGCGCC-CGGCgGGCGAGaucgaGGUCGUCa -3'
miRNA:   3'- -UGCGGaGCCGgCUGCUCga---CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 28381 0.66 0.472868
Target:  5'- gGCGCaacucgUGGCUGACGcaGGaaacGAUCGCCg -3'
miRNA:   3'- -UGCGga----GCCGGCUGC--UCga--CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 28291 0.71 0.253911
Target:  5'- -aGCCgucgCGGCUGcgcuugcCGAGCUGcagGUCGCCg -3'
miRNA:   3'- ugCGGa---GCCGGCu------GCUCGAC---UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 28229 0.72 0.218221
Target:  5'- cCGCgaCGGCuCGAcCGAGCaGAUCGUCg -3'
miRNA:   3'- uGCGgaGCCG-GCU-GCUCGaCUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 28020 0.66 0.482694
Target:  5'- gACGagcgCGGCaagccgauccuCGGCGAGCUGAcgaccaaguggcUCGCCu -3'
miRNA:   3'- -UGCgga-GCCG-----------GCUGCUCGACU------------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 27893 0.66 0.499621
Target:  5'- -aGCC-CGGCCagccgcccgaguacGcCGAGCUGcugCGCCa -3'
miRNA:   3'- ugCGGaGCCGG--------------CuGCUCGACua-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 27560 0.71 0.229616
Target:  5'- cCGCCUCgGGCCGcugacACGAGCcccGAUCGgCu -3'
miRNA:   3'- uGCGGAG-CCGGC-----UGCUCGa--CUAGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.