miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 5757 1.1 0.000306
Target:  5'- aACGCCUCGGCCGACGAGCUGAUCGCCu -3'
miRNA:   3'- -UGCGGAGCCGGCUGCUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 26710 0.72 0.202037
Target:  5'- gACGCCgUCGuGCgCGgcGCGAGCUGgAUCGCg -3'
miRNA:   3'- -UGCGG-AGC-CG-GC--UGCUCGAC-UAGCGg -5'
12892 3' -59.7 NC_003387.1 + 16386 0.72 0.218221
Target:  5'- -gGCCa-GGCCGACGAcacGCUGAUgGCg -3'
miRNA:   3'- ugCGGagCCGGCUGCU---CGACUAgCGg -5'
12892 3' -59.7 NC_003387.1 + 11397 0.65 0.511726
Target:  5'- gGCGCCacgcuggccgcgaUCGGCCccGAgGuGCUG-UCGUCg -3'
miRNA:   3'- -UGCGG-------------AGCCGG--CUgCuCGACuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 45880 0.79 0.066511
Target:  5'- cGCGCCgCGGCCGAgCGGGC-GAUCGaCCu -3'
miRNA:   3'- -UGCGGaGCCGGCU-GCUCGaCUAGC-GG- -5'
12892 3' -59.7 NC_003387.1 + 45393 0.76 0.106508
Target:  5'- uGCGCC-CGGCCGccCGAGCcGAUCGUg -3'
miRNA:   3'- -UGCGGaGCCGGCu-GCUCGaCUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 457 0.76 0.112489
Target:  5'- cCGCCgcggCGGCCGacggcgaccggcGCGAGCUGcUCGUCg -3'
miRNA:   3'- uGCGGa---GCCGGC------------UGCUCGACuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 32225 0.76 0.113723
Target:  5'- cGCGCUgcgCGaGCgCGACGAGCUGGccgaccgccuggccgUCGCCg -3'
miRNA:   3'- -UGCGGa--GC-CG-GCUGCUCGACU---------------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 23889 0.74 0.151354
Target:  5'- -gGCU--GGCCGACGuGCUGcgCGCCg -3'
miRNA:   3'- ugCGGagCCGGCUGCuCGACuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 5211 0.72 0.201516
Target:  5'- gGCGCCUCGGguaCCGcACGAugcugcucgacauGCUGAacaacUCGCCc -3'
miRNA:   3'- -UGCGGAGCC---GGC-UGCU-------------CGACU-----AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 6665 0.74 0.15962
Target:  5'- gACGCCgacgCGG-CGAuCGAGgUGAUUGCCg -3'
miRNA:   3'- -UGCGGa---GCCgGCU-GCUCgACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 26609 0.74 0.143478
Target:  5'- aACGCCUCGG-CGGCGAaGCUGGaCGgCa -3'
miRNA:   3'- -UGCGGAGCCgGCUGCU-CGACUaGCgG- -5'
12892 3' -59.7 NC_003387.1 + 18204 0.83 0.03376
Target:  5'- uGCGCCUCGGCgacgcgacgacCGGCGAcCUGGUCGCCc -3'
miRNA:   3'- -UGCGGAGCCG-----------GCUGCUcGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 13558 0.73 0.186907
Target:  5'- -gGCCUgGGCagcccgauCGACGggcaggacgucGGCUGGUCGCCg -3'
miRNA:   3'- ugCGGAgCCG--------GCUGC-----------UCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 40928 0.82 0.037828
Target:  5'- -gGCCUgaUGGaCGGCGAGCUGGUCGCCa -3'
miRNA:   3'- ugCGGA--GCCgGCUGCUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 32159 0.75 0.128842
Target:  5'- cCGCCUgcaGGCacagauuGACGAGCUGAcCGCCg -3'
miRNA:   3'- uGCGGAg--CCGg------CUGCUCGACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 44651 0.72 0.196879
Target:  5'- -gGCCUCggcgauccuGGCCGAgGGGCUGccggugcUCGCCa -3'
miRNA:   3'- ugCGGAG---------CCGGCUgCUCGACu------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 13852 0.72 0.212707
Target:  5'- cGCGUCUagcuaaCGGCCGGCGAGC----CGCCg -3'
miRNA:   3'- -UGCGGA------GCCGGCUGCUCGacuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 39594 0.81 0.048815
Target:  5'- uGCGCaccagcgaGGCCGACGAGUgGAUCGCCg -3'
miRNA:   3'- -UGCGgag-----CCGGCUGCUCGaCUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 34241 0.76 0.10946
Target:  5'- gGC-CCUCGGggcgcUCGACcGGCUGAUCGCCg -3'
miRNA:   3'- -UGcGGAGCC-----GGCUGcUCGACUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.