Results 21 - 40 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 50105 | 0.71 | 0.229616 |
Target: 5'- uCGCCgaGGCCcGCGAGCgccuggucacGAUCGCCg -3' miRNA: 3'- uGCGGagCCGGcUGCUCGa---------CUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 16386 | 0.72 | 0.218221 |
Target: 5'- -gGCCa-GGCCGACGAcacGCUGAUgGCg -3' miRNA: 3'- ugCGGagCCGGCUGCU---CGACUAgCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 26609 | 0.74 | 0.143478 |
Target: 5'- aACGCCUCGG-CGGCGAaGCUGGaCGgCa -3' miRNA: 3'- -UGCGGAGCCgGCUGCU-CGACUaGCgG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 39594 | 0.81 | 0.048815 |
Target: 5'- uGCGCaccagcgaGGCCGACGAGUgGAUCGCCg -3' miRNA: 3'- -UGCGgag-----CCGGCUGCUCGaCUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 46769 | 0.7 | 0.29426 |
Target: 5'- aGCGaCUcgCGGuUCGGCGAGCUGAUCGa- -3' miRNA: 3'- -UGC-GGa-GCC-GGCUGCUCGACUAGCgg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 9369 | 0.71 | 0.252018 |
Target: 5'- -aGCCgguggCGGCCGaggcgacccccgagGCGGGCaagacGAUCGCCg -3' miRNA: 3'- ugCGGa----GCCGGC--------------UGCUCGa----CUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 26710 | 0.72 | 0.202037 |
Target: 5'- gACGCCgUCGuGCgCGgcGCGAGCUGgAUCGCg -3' miRNA: 3'- -UGCGG-AGC-CG-GC--UGCUCGAC-UAGCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 40928 | 0.82 | 0.037828 |
Target: 5'- -gGCCUgaUGGaCGGCGAGCUGGUCGCCa -3' miRNA: 3'- ugCGGA--GCCgGCUGCUCGACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 4555 | 0.71 | 0.247646 |
Target: 5'- gGCGaCUacgacaaGGCCGACaAGCUGcUCGCCg -3' miRNA: 3'- -UGCgGAg------CCGGCUGcUCGACuAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 18204 | 0.83 | 0.03376 |
Target: 5'- uGCGCCUCGGCgacgcgacgacCGGCGAcCUGGUCGCCc -3' miRNA: 3'- -UGCGGAGCCG-----------GCUGCUcGACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 13852 | 0.72 | 0.212707 |
Target: 5'- cGCGUCUagcuaaCGGCCGGCGAGC----CGCCg -3' miRNA: 3'- -UGCGGA------GCCGGCUGCUCGacuaGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 27560 | 0.71 | 0.229616 |
Target: 5'- cCGCCUCgGGCCGcugacACGAGCcccGAUCGgCu -3' miRNA: 3'- uGCGGAG-CCGGC-----UGCUCGa--CUAGCgG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 13558 | 0.73 | 0.186907 |
Target: 5'- -gGCCUgGGCagcccgauCGACGggcaggacgucGGCUGGUCGCCg -3' miRNA: 3'- ugCGGAgCCG--------GCUGC-----------UCGACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 23889 | 0.74 | 0.151354 |
Target: 5'- -gGCU--GGCCGACGuGCUGcgCGCCg -3' miRNA: 3'- ugCGGagCCGGCUGCuCGACuaGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 457 | 0.76 | 0.112489 |
Target: 5'- cCGCCgcggCGGCCGacggcgaccggcGCGAGCUGcUCGUCg -3' miRNA: 3'- uGCGGa---GCCGGC------------UGCUCGACuAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 45880 | 0.79 | 0.066511 |
Target: 5'- cGCGCCgCGGCCGAgCGGGC-GAUCGaCCu -3' miRNA: 3'- -UGCGGaGCCGGCU-GCUCGaCUAGC-GG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 2031 | 0.69 | 0.323836 |
Target: 5'- cCGCCgaCGGCCGccgucgcCGAGCUGGcCGCg -3' miRNA: 3'- uGCGGa-GCCGGCu------GCUCGACUaGCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 32321 | 0.7 | 0.29426 |
Target: 5'- gAUGCCcgacaUGGaCCGcuGCG-GCUGAUCGCCg -3' miRNA: 3'- -UGCGGa----GCC-GGC--UGCuCGACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 48686 | 0.7 | 0.271479 |
Target: 5'- uCGCCccaggaGGCCGccacGCGguucuuuugggccuGGCUGAUCGCCg -3' miRNA: 3'- uGCGGag----CCGGC----UGC--------------UCGACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 5332 | 0.71 | 0.260306 |
Target: 5'- aACGCCuaaUCGGCCGGUGAuGCUGAcgaGCUa -3' miRNA: 3'- -UGCGG---AGCCGGCUGCU-CGACUag-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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