miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 35581 0.7 0.28028
Target:  5'- gGCGCCcUGGCCGAgcugguCGAcacaGC-GAUCGCCu -3'
miRNA:   3'- -UGCGGaGCCGGCU------GCU----CGaCUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 26710 0.72 0.202037
Target:  5'- gACGCCgUCGuGCgCGgcGCGAGCUGgAUCGCg -3'
miRNA:   3'- -UGCGG-AGC-CG-GC--UGCUCGAC-UAGCGg -5'
12892 3' -59.7 NC_003387.1 + 40928 0.82 0.037828
Target:  5'- -gGCCUgaUGGaCGGCGAGCUGGUCGCCa -3'
miRNA:   3'- ugCGGA--GCCgGCUGCUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 27289 0.7 0.28028
Target:  5'- aACGCCgcacuggCGGCCcuugaGAGCcgcgucgccgUGAUCGCCg -3'
miRNA:   3'- -UGCGGa------GCCGGcug--CUCG----------ACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 18204 0.83 0.03376
Target:  5'- uGCGCCUCGGCgacgcgacgacCGGCGAcCUGGUCGCCc -3'
miRNA:   3'- -UGCGGAGCCG-----------GCUGCUcGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 13644 0.68 0.389432
Target:  5'- -gGCCaccgUCGG-CGGCG-GCUcGGUCGCCg -3'
miRNA:   3'- ugCGG----AGCCgGCUGCuCGA-CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 45880 0.79 0.066511
Target:  5'- cGCGCCgCGGCCGAgCGGGC-GAUCGaCCu -3'
miRNA:   3'- -UGCGGaGCCGGCU-GCUCGaCUAGC-GG- -5'
12892 3' -59.7 NC_003387.1 + 38046 0.68 0.380771
Target:  5'- gGCGCCccgaUCGGgCGGUG-GCUGAgcgagCGCCg -3'
miRNA:   3'- -UGCGG----AGCCgGCUGCuCGACUa----GCGG- -5'
12892 3' -59.7 NC_003387.1 + 36211 0.68 0.37224
Target:  5'- gGCGCCUCGGCguaauCGAGgUcGUCGCa -3'
miRNA:   3'- -UGCGGAGCCGgcu--GCUCgAcUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 2126 0.68 0.355571
Target:  5'- gACGCCccagCGGCCGACGuGgaGuUCcCCg -3'
miRNA:   3'- -UGCGGa---GCCGGCUGCuCgaCuAGcGG- -5'
12892 3' -59.7 NC_003387.1 + 41143 0.69 0.345021
Target:  5'- cGCGCCgaCGGCCGcugcgagugucaggGCGAGUgcggccGGUCGCa -3'
miRNA:   3'- -UGCGGa-GCCGGC--------------UGCUCGa-----CUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 2031 0.69 0.323836
Target:  5'- cCGCCgaCGGCCGccgucgcCGAGCUGGcCGCg -3'
miRNA:   3'- uGCGGa-GCCGGCu------GCUCGACUaGCGg -5'
12892 3' -59.7 NC_003387.1 + 32321 0.7 0.29426
Target:  5'- gAUGCCcgacaUGGaCCGcuGCG-GCUGAUCGCCg -3'
miRNA:   3'- -UGCGGa----GCC-GGC--UGCuCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 21689 0.71 0.260306
Target:  5'- gACGCCcUGGCCGccucgGCGAGCgcgGcccgCGCCg -3'
miRNA:   3'- -UGCGGaGCCGGC-----UGCUCGa--Cua--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 4555 0.71 0.247646
Target:  5'- gGCGaCUacgacaaGGCCGACaAGCUGcUCGCCg -3'
miRNA:   3'- -UGCgGAg------CCGGCUGcUCGACuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 50105 0.71 0.229616
Target:  5'- uCGCCgaGGCCcGCGAGCgccuggucacGAUCGCCg -3'
miRNA:   3'- uGCGGagCCGGcUGCUCGa---------CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 16386 0.72 0.218221
Target:  5'- -gGCCa-GGCCGACGAcacGCUGAUgGCg -3'
miRNA:   3'- ugCGGagCCGGCUGCU---CGACUAgCGg -5'
12892 3' -59.7 NC_003387.1 + 13558 0.73 0.186907
Target:  5'- -gGCCUgGGCagcccgauCGACGggcaggacgucGGCUGGUCGCCg -3'
miRNA:   3'- ugCGGAgCCG--------GCUGC-----------UCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 23889 0.74 0.151354
Target:  5'- -gGCU--GGCCGACGuGCUGcgCGCCg -3'
miRNA:   3'- ugCGGagCCGGCUGCuCGACuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 457 0.76 0.112489
Target:  5'- cCGCCgcggCGGCCGacggcgaccggcGCGAGCUGcUCGUCg -3'
miRNA:   3'- uGCGGa---GCCGGC------------UGCUCGACuAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.