miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 32321 0.7 0.29426
Target:  5'- gAUGCCcgacaUGGaCCGcuGCG-GCUGAUCGCCg -3'
miRNA:   3'- -UGCGGa----GCC-GGC--UGCuCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 29728 0.69 0.339435
Target:  5'- -gGCCgacgaCGGCagcuacgcgGGCGAGCUGGaCGCCg -3'
miRNA:   3'- ugCGGa----GCCGg--------CUGCUCGACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 45393 0.76 0.106508
Target:  5'- uGCGCC-CGGCCGccCGAGCcGAUCGUg -3'
miRNA:   3'- -UGCGGaGCCGGCu-GCUCGaCUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 32225 0.76 0.113723
Target:  5'- cGCGCUgcgCGaGCgCGACGAGCUGGccgaccgccuggccgUCGCCg -3'
miRNA:   3'- -UGCGGa--GC-CG-GCUGCUCGACU---------------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 4060 0.74 0.15962
Target:  5'- uACGCCUCGGUcaCGGCGuGCgGGUucUGCCg -3'
miRNA:   3'- -UGCGGAGCCG--GCUGCuCGaCUA--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 44651 0.72 0.196879
Target:  5'- -gGCCUCggcgauccuGGCCGAgGGGCUGccggugcUCGCCa -3'
miRNA:   3'- ugCGGAG---------CCGGCUgCUCGACu------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 28229 0.72 0.218221
Target:  5'- cCGCgaCGGCuCGAcCGAGCaGAUCGUCg -3'
miRNA:   3'- uGCGgaGCCG-GCU-GCUCGaCUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 27560 0.71 0.229616
Target:  5'- cCGCCUCgGGCCGcugacACGAGCcccGAUCGgCu -3'
miRNA:   3'- uGCGGAG-CCGGC-----UGCUCGa--CUAGCgG- -5'
12892 3' -59.7 NC_003387.1 + 9369 0.71 0.252018
Target:  5'- -aGCCgguggCGGCCGaggcgacccccgagGCGGGCaagacGAUCGCCg -3'
miRNA:   3'- ugCGGa----GCCGGC--------------UGCUCGa----CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 7817 0.7 0.264861
Target:  5'- aACGCCUggCGGCCGAgGucgcccggcgcgcaGGCgGAaUCGCCg -3'
miRNA:   3'- -UGCGGA--GCCGGCUgC--------------UCGaCU-AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 18296 0.67 0.444014
Target:  5'- aGCGCCgaccCGGCCG-CGGcGgUGG-CGCCc -3'
miRNA:   3'- -UGCGGa---GCCGGCuGCU-CgACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 30297 0.67 0.444014
Target:  5'- cGCGCCUgGGaCGACGcgcauuaccagGGCUGGcggCGCUu -3'
miRNA:   3'- -UGCGGAgCCgGCUGC-----------UCGACUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 23379 0.69 0.347436
Target:  5'- -aGCUgauUCGggucGCCGACGAGCUGAacaUGCCc -3'
miRNA:   3'- ugCGG---AGC----CGGCUGCUCGACUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 26120 0.68 0.37224
Target:  5'- uGCGCCa-GGUCGGCGcGUccGUCGCCg -3'
miRNA:   3'- -UGCGGagCCGGCUGCuCGacUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 38046 0.68 0.380771
Target:  5'- gGCGCCccgaUCGGgCGGUG-GCUGAgcgagCGCCg -3'
miRNA:   3'- -UGCGG----AGCCgGCUGCuCGACUa----GCGG- -5'
12892 3' -59.7 NC_003387.1 + 13644 0.68 0.389432
Target:  5'- -gGCCaccgUCGG-CGGCG-GCUcGGUCGCCg -3'
miRNA:   3'- ugCGG----AGCCgGCUGCuCGA-CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 48763 0.68 0.39469
Target:  5'- cACGCacgCGGUgcuCGGCGcagccagcucgccGCUGAUCGCCg -3'
miRNA:   3'- -UGCGga-GCCG---GCUGCu------------CGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 11692 0.67 0.407136
Target:  5'- uCGCCgCGGUCGuCGGGCUcgcuGUCGCg -3'
miRNA:   3'- uGCGGaGCCGGCuGCUCGAc---UAGCGg -5'
12892 3' -59.7 NC_003387.1 + 4452 0.67 0.416176
Target:  5'- cGCGCCgaaGGCCGAgcCGAccGCcGAgccCGCCg -3'
miRNA:   3'- -UGCGGag-CCGGCU--GCU--CGaCUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 35351 0.67 0.434617
Target:  5'- gACGCCgagacaGGCuCGcCGcacCUGAUCGCCg -3'
miRNA:   3'- -UGCGGag----CCG-GCuGCuc-GACUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.