miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 10688 0.68 0.389432
Target:  5'- cCGCCUCGGCgGugGccGCcGGUaucaaGCCg -3'
miRNA:   3'- uGCGGAGCCGgCugCu-CGaCUAg----CGG- -5'
12892 3' -59.7 NC_003387.1 + 48763 0.68 0.39469
Target:  5'- cACGCacgCGGUgcuCGGCGcagccagcucgccGCUGAUCGCCg -3'
miRNA:   3'- -UGCGga-GCCG---GCUGCu------------CGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 11692 0.67 0.407136
Target:  5'- uCGCCgCGGUCGuCGGGCUcgcuGUCGCg -3'
miRNA:   3'- uGCGGaGCCGGCuGCUCGAc---UAGCGg -5'
12892 3' -59.7 NC_003387.1 + 1616 0.67 0.415266
Target:  5'- gGCGaUUUCGGUCGGCGcgugcuGGCUGAUggacgacgacggcCGCCa -3'
miRNA:   3'- -UGC-GGAGCCGGCUGC------UCGACUA-------------GCGG- -5'
12892 3' -59.7 NC_003387.1 + 42548 0.67 0.416176
Target:  5'- gACGCCga-GCUGGCGAGCgaGAUUGgCg -3'
miRNA:   3'- -UGCGGagcCGGCUGCUCGa-CUAGCgG- -5'
12892 3' -59.7 NC_003387.1 + 49889 0.67 0.434617
Target:  5'- aAUGCCggCGagaGCCGAuuugugcgcUGAGCUGcgcGUCGCCg -3'
miRNA:   3'- -UGCGGa-GC---CGGCU---------GCUCGAC---UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 30297 0.67 0.444014
Target:  5'- cGCGCCUgGGaCGACGcgcauuaccagGGCUGGcggCGCUu -3'
miRNA:   3'- -UGCGGAgCCgGCUGC-----------UCGACUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 39242 0.69 0.334698
Target:  5'- gGCGCCgggcgaGGCCGucgaguucgaccucgGCGAGCUGGgcaaGCUg -3'
miRNA:   3'- -UGCGGag----CCGGC---------------UGCUCGACUag--CGG- -5'
12892 3' -59.7 NC_003387.1 + 47948 0.69 0.308778
Target:  5'- gACGCCgugugGGCCGcgaagcaccGCGAGCUGggCGgCa -3'
miRNA:   3'- -UGCGGag---CCGGC---------UGCUCGACuaGCgG- -5'
12892 3' -59.7 NC_003387.1 + 27289 0.7 0.28028
Target:  5'- aACGCCgcacuggCGGCCcuugaGAGCcgcgucgccgUGAUCGCCg -3'
miRNA:   3'- -UGCGGa------GCCGGcug--CUCG----------ACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 2495 0.66 0.469939
Target:  5'- gGCGCCUCGuaugugacggugacGCCGACugaugagGGGCcgguguuccgcacgcGGUCGCCg -3'
miRNA:   3'- -UGCGGAGC--------------CGGCUG-------CUCGa--------------CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 47233 0.66 0.472868
Target:  5'- -gGCCUCGGCCaGGugcCGGGCgacuugaacGAUCuGCCc -3'
miRNA:   3'- ugCGGAGCCGG-CU---GCUCGa--------CUAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 36733 0.66 0.472868
Target:  5'- -gGCCUCGacGCCGucuGCGAGCgccUGggCGUCa -3'
miRNA:   3'- ugCGGAGC--CGGC---UGCUCG---ACuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 10240 0.66 0.482694
Target:  5'- gACGCgaUGaGCCGcgccgagcGCGGGCUcaaGGUCGCCc -3'
miRNA:   3'- -UGCGgaGC-CGGC--------UGCUCGA---CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 15173 0.66 0.482694
Target:  5'- cGCGCCgcgaGGUgauCGACGAGgaGGcccgCGCCc -3'
miRNA:   3'- -UGCGGag--CCG---GCUGCUCgaCUa---GCGG- -5'
12892 3' -59.7 NC_003387.1 + 13558 0.73 0.186907
Target:  5'- -gGCCUgGGCagcccgauCGACGggcaggacgucGGCUGGUCGCCg -3'
miRNA:   3'- ugCGGAgCCG--------GCUGC-----------UCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 26710 0.72 0.202037
Target:  5'- gACGCCgUCGuGCgCGgcGCGAGCUGgAUCGCg -3'
miRNA:   3'- -UGCGG-AGC-CG-GC--UGCUCGAC-UAGCGg -5'
12892 3' -59.7 NC_003387.1 + 49309 0.71 0.229616
Target:  5'- cACGCCgagggcaCGGCCc-CGAGCaUGAUCGCg -3'
miRNA:   3'- -UGCGGa------GCCGGcuGCUCG-ACUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 50239 0.71 0.231954
Target:  5'- gGCGCCUaccggaucgaggaggUGGCCGACGuGCgcaccgaggUGAUCGUg -3'
miRNA:   3'- -UGCGGA---------------GCCGGCUGCuCG---------ACUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 21689 0.71 0.260306
Target:  5'- gACGCCcUGGCCGccucgGCGAGCgcgGcccgCGCCg -3'
miRNA:   3'- -UGCGGaGCCGGC-----UGCUCGa--Cua--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.