miRNA display CGI


Results 101 - 120 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 30297 0.67 0.444014
Target:  5'- cGCGCCUgGGaCGACGcgcauuaccagGGCUGGcggCGCUu -3'
miRNA:   3'- -UGCGGAgCCgGCUGC-----------UCGACUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 13644 0.68 0.389432
Target:  5'- -gGCCaccgUCGG-CGGCG-GCUcGGUCGCCg -3'
miRNA:   3'- ugCGG----AGCCgGCUGCuCGA-CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 43913 0.68 0.389432
Target:  5'- -gGCCaaguUCGGgCG-CGAGCUGAgcgggaaucaggUCGCCc -3'
miRNA:   3'- ugCGG----AGCCgGCuGCUCGACU------------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 35633 0.67 0.407136
Target:  5'- cCGCCgaggCGGCCgGGCGGGCac-UgGCCg -3'
miRNA:   3'- uGCGGa---GCCGG-CUGCUCGacuAgCGG- -5'
12892 3' -59.7 NC_003387.1 + 4452 0.67 0.416176
Target:  5'- cGCGCCgaaGGCCGAgcCGAccGCcGAgccCGCCg -3'
miRNA:   3'- -UGCGGag-CCGGCU--GCU--CGaCUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 3611 0.68 0.37224
Target:  5'- gGCGUCcUGGCCGagcugaGCGGGCgugcggGuAUCGCCg -3'
miRNA:   3'- -UGCGGaGCCGGC------UGCUCGa-----C-UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 35719 0.67 0.434617
Target:  5'- -gGCCUgCcGCUGAcCGAGCUGGacgaaaUCGCCc -3'
miRNA:   3'- ugCGGA-GcCGGCU-GCUCGACU------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 43667 0.68 0.379912
Target:  5'- uCGCCgaggaGGgCGACGcgauccuGGCgugGAUCGCCg -3'
miRNA:   3'- uGCGGag---CCgGCUGC-------UCGa--CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 23824 0.7 0.287203
Target:  5'- uACGCCUgCGGgacgcCCGACc-GCUgGAUCGCCu -3'
miRNA:   3'- -UGCGGA-GCC-----GGCUGcuCGA-CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 33534 0.7 0.29426
Target:  5'- gGCGaCUUCGGCCGccuugcGCGAGgUGGUgGCg -3'
miRNA:   3'- -UGC-GGAGCCGGC------UGCUCgACUAgCGg -5'
12892 3' -59.7 NC_003387.1 + 40513 0.7 0.27349
Target:  5'- gGCGCUgucaGGCCGGgcCGGGCcGGUuCGCCg -3'
miRNA:   3'- -UGCGGag--CCGGCU--GCUCGaCUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 45054 0.7 0.266832
Target:  5'- cCGCCUCGGCgGcaGCG-GC-GAUCGCg -3'
miRNA:   3'- uGCGGAGCCGgC--UGCuCGaCUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 18369 0.7 0.29426
Target:  5'- cCGCCgCGGCCGGguCGGcGCUGGUCGa- -3'
miRNA:   3'- uGCGGaGCCGGCU--GCU-CGACUAGCgg -5'
12892 3' -59.7 NC_003387.1 + 37833 0.7 0.301452
Target:  5'- cACGCCUUgaGGUCGcCGAGCaGcUUGCCg -3'
miRNA:   3'- -UGCGGAG--CCGGCuGCUCGaCuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 24578 0.67 0.425337
Target:  5'- -gGCUgCGGCUGACGAaccGCcGGUCgGCCa -3'
miRNA:   3'- ugCGGaGCCGGCUGCU---CGaCUAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 44475 0.67 0.434617
Target:  5'- -aGCgUCaGCCGcgGCGAGCU--UCGCCu -3'
miRNA:   3'- ugCGgAGcCGGC--UGCUCGAcuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 24885 0.67 0.434617
Target:  5'- -gGCCUUGaCCGGCG-GCgUGggCGCCu -3'
miRNA:   3'- ugCGGAGCcGGCUGCuCG-ACuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 706 0.67 0.444014
Target:  5'- cUGCCgCGG-CGGCGAcGCUGcccUCGCCc -3'
miRNA:   3'- uGCGGaGCCgGCUGCU-CGACu--AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 48315 0.7 0.29426
Target:  5'- -gGCCgCGGCCGAcCGGGCgcgacacGAUCGUg -3'
miRNA:   3'- ugCGGaGCCGGCU-GCUCGa------CUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 4688 0.7 0.28028
Target:  5'- cCGCCUUGGCCGccuugGCuuGCUGcgCGCg -3'
miRNA:   3'- uGCGGAGCCGGC-----UGcuCGACuaGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.