miRNA display CGI


Results 121 - 140 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 48315 0.7 0.29426
Target:  5'- -gGCCgCGGCCGAcCGGGCgcgacacGAUCGUg -3'
miRNA:   3'- ugCGGaGCCGGCU-GCUCGa------CUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 33534 0.7 0.29426
Target:  5'- gGCGaCUUCGGCCGccuugcGCGAGgUGGUgGCg -3'
miRNA:   3'- -UGC-GGAGCCGGC------UGCUCgACUAgCGg -5'
12892 3' -59.7 NC_003387.1 + 18369 0.7 0.29426
Target:  5'- cCGCCgCGGCCGGguCGGcGCUGGUCGa- -3'
miRNA:   3'- uGCGGaGCCGGCU--GCU-CGACUAGCgg -5'
12892 3' -59.7 NC_003387.1 + 9441 0.69 0.339435
Target:  5'- uCGCCUCGGCCGccACcGGCUcGUCGaCg -3'
miRNA:   3'- uGCGGAGCCGGC--UGcUCGAcUAGCgG- -5'
12892 3' -59.7 NC_003387.1 + 52610 0.69 0.339435
Target:  5'- gACGCC-CGGCCGccagcucgGCG-GCUuGUCGCUc -3'
miRNA:   3'- -UGCGGaGCCGGC--------UGCuCGAcUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 39832 0.86 0.021374
Target:  5'- uGCGCaC-CGGUCGGCGAGCUGGUCGUCg -3'
miRNA:   3'- -UGCG-GaGCCGGCUGCUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 48218 0.69 0.331568
Target:  5'- -gGCCUCGG-UGGCGcGCUGcgCGCg -3'
miRNA:   3'- ugCGGAGCCgGCUGCuCGACuaGCGg -5'
12892 3' -59.7 NC_003387.1 + 25893 0.69 0.316239
Target:  5'- cCGCC-CaGGCCGcCGAGCaGGcCGCCa -3'
miRNA:   3'- uGCGGaG-CCGGCuGCUCGaCUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 52090 0.69 0.316239
Target:  5'- uCGCCUCgucgucgagGGCCGAcagguCGGGCaGGUgCGCCa -3'
miRNA:   3'- uGCGGAG---------CCGGCU-----GCUCGaCUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 41766 0.7 0.301452
Target:  5'- gGCGCCgCGacGCCGGguCGGGUUGA-CGCCg -3'
miRNA:   3'- -UGCGGaGC--CGGCU--GCUCGACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 10375 0.69 0.308778
Target:  5'- cGCGUCcUGGCCuGCGcGCUGAgCGCCc -3'
miRNA:   3'- -UGCGGaGCCGGcUGCuCGACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 24578 0.67 0.425337
Target:  5'- -gGCUgCGGCUGACGAaccGCcGGUCgGCCa -3'
miRNA:   3'- ugCGGaGCCGGCUGCU---CGaCUAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 44475 0.67 0.434617
Target:  5'- -aGCgUCaGCCGcgGCGAGCU--UCGCCu -3'
miRNA:   3'- ugCGgAGcCGGC--UGCUCGAcuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 24885 0.67 0.434617
Target:  5'- -gGCCUUGaCCGGCG-GCgUGggCGCCu -3'
miRNA:   3'- ugCGGAGCcGGCUGCuCG-ACuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 706 0.67 0.444014
Target:  5'- cUGCCgCGG-CGGCGAcGCUGcccUCGCCc -3'
miRNA:   3'- uGCGGaGCCgGCUGCU-CGACu--AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 41466 0.67 0.453523
Target:  5'- uGCGCCUCGGUCGcCcGGCgc-UCgGCCu -3'
miRNA:   3'- -UGCGGAGCCGGCuGcUCGacuAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 17729 0.67 0.453523
Target:  5'- cACGCCUUGcccuuGUCGGuCGGGCcGAggcUCGCCu -3'
miRNA:   3'- -UGCGGAGC-----CGGCU-GCUCGaCU---AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 36962 0.67 0.453523
Target:  5'- gACGCCgacgCGGUgcccguCGGCGAGCacaAUCGUCu -3'
miRNA:   3'- -UGCGGa---GCCG------GCUGCUCGac-UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 43734 0.7 0.301452
Target:  5'- uCGCCcuccUCGG-CGACuAGCUGGUgCGCCa -3'
miRNA:   3'- uGCGG----AGCCgGCUGcUCGACUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 37833 0.7 0.301452
Target:  5'- cACGCCUUgaGGUCGcCGAGCaGcUUGCCg -3'
miRNA:   3'- -UGCGGAG--CCGGCuGCUCGaCuAGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.