Results 61 - 80 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 17842 | 0.66 | 0.463143 |
Target: 5'- uCGUUUCGGCCGACgccgugauGAGCgguGUgGCCc -3' miRNA: 3'- uGCGGAGCCGGCUG--------CUCGac-UAgCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 34493 | 0.66 | 0.463143 |
Target: 5'- uGCGCaggaauGCCGGCGAgugcgucgucGCUGGUCGCg -3' miRNA: 3'- -UGCGgagc--CGGCUGCU----------CGACUAGCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 32328 | 0.67 | 0.416176 |
Target: 5'- -gGCCUCGG-CGACGgccaGGC-GGUCgGCCa -3' miRNA: 3'- ugCGGAGCCgGCUGC----UCGaCUAG-CGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 40338 | 0.68 | 0.401772 |
Target: 5'- cGCGCagaUCGGUcugcacggucaCGACGAGCUGcaugcgggggcugccGUCGUCc -3' miRNA: 3'- -UGCGg--AGCCG-----------GCUGCUCGAC---------------UAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 5875 | 0.68 | 0.398221 |
Target: 5'- uGCGCUUCGGUgGuGCGGGCggcuuguucUGGUcaCGCCa -3' miRNA: 3'- -UGCGGAGCCGgC-UGCUCG---------ACUA--GCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 22185 | 0.68 | 0.398221 |
Target: 5'- cCGCCagGGCCGcCGGGgaUGG-CGCCg -3' miRNA: 3'- uGCGGagCCGGCuGCUCg-ACUaGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 36854 | 0.68 | 0.398221 |
Target: 5'- uGCGCgUCGGCCagcgcCGAGUgccGUCGCUg -3' miRNA: 3'- -UGCGgAGCCGGcu---GCUCGac-UAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 39384 | 0.68 | 0.398221 |
Target: 5'- cACGCCcucgccguugUCGGCCGG-GGGCUugccGUCGUCg -3' miRNA: 3'- -UGCGG----------AGCCGGCUgCUCGAc---UAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 46167 | 0.68 | 0.398221 |
Target: 5'- cAUGUCggCGGCCGucuUGGGCUcGUCGUCg -3' miRNA: 3'- -UGCGGa-GCCGGCu--GCUCGAcUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 6430 | 0.68 | 0.38856 |
Target: 5'- gUGCCgaaaaugaCGGCCuGGuCGAGCUucuugccGAUCGCCu -3' miRNA: 3'- uGCGGa-------GCCGG-CU-GCUCGA-------CUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 24578 | 0.67 | 0.425337 |
Target: 5'- -gGCUgCGGCUGACGAaccGCcGGUCgGCCa -3' miRNA: 3'- ugCGGaGCCGGCUGCU---CGaCUAG-CGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 44475 | 0.67 | 0.434617 |
Target: 5'- -aGCgUCaGCCGcgGCGAGCU--UCGCCu -3' miRNA: 3'- ugCGgAGcCGGC--UGCUCGAcuAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 16769 | 0.66 | 0.462176 |
Target: 5'- aACGUCUUGGgCGuguucucgucguaAUGcAGCuUGAUCGCCg -3' miRNA: 3'- -UGCGGAGCCgGC-------------UGC-UCG-ACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 20249 | 0.67 | 0.453523 |
Target: 5'- gGCGCCgucCGG-UGGCGAGCcgacGGUgGCCu -3' miRNA: 3'- -UGCGGa--GCCgGCUGCUCGa---CUAgCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 36962 | 0.67 | 0.453523 |
Target: 5'- gACGCCgacgCGGUgcccguCGGCGAGCacaAUCGUCu -3' miRNA: 3'- -UGCGGa---GCCG------GCUGCUCGac-UAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 17729 | 0.67 | 0.453523 |
Target: 5'- cACGCCUUGcccuuGUCGGuCGGGCcGAggcUCGCCu -3' miRNA: 3'- -UGCGGAGC-----CGGCU-GCUCGaCU---AGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 41466 | 0.67 | 0.453523 |
Target: 5'- uGCGCCUCGGUCGcCcGGCgc-UCgGCCu -3' miRNA: 3'- -UGCGGAGCCGGCuGcUCGacuAG-CGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 29870 | 0.67 | 0.453523 |
Target: 5'- gACGCUaguccucgaUCGGCauGCGgucacgccguAGCUGAUCGUCa -3' miRNA: 3'- -UGCGG---------AGCCGgcUGC----------UCGACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 706 | 0.67 | 0.444014 |
Target: 5'- cUGCCgCGG-CGGCGAcGCUGcccUCGCCc -3' miRNA: 3'- uGCGGaGCCgGCUGCU-CGACu--AGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 24885 | 0.67 | 0.434617 |
Target: 5'- -gGCCUUGaCCGGCG-GCgUGggCGCCu -3' miRNA: 3'- ugCGGAGCcGGCUGCuCG-ACuaGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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