miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 36854 0.68 0.398221
Target:  5'- uGCGCgUCGGCCagcgcCGAGUgccGUCGCUg -3'
miRNA:   3'- -UGCGgAGCCGGcu---GCUCGac-UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 22185 0.68 0.398221
Target:  5'- cCGCCagGGCCGcCGGGgaUGG-CGCCg -3'
miRNA:   3'- uGCGGagCCGGCuGCUCg-ACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 17729 0.67 0.453523
Target:  5'- cACGCCUUGcccuuGUCGGuCGGGCcGAggcUCGCCu -3'
miRNA:   3'- -UGCGGAGC-----CGGCU-GCUCGaCU---AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 41466 0.67 0.453523
Target:  5'- uGCGCCUCGGUCGcCcGGCgc-UCgGCCu -3'
miRNA:   3'- -UGCGGAGCCGGCuGcUCGacuAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 29870 0.67 0.453523
Target:  5'- gACGCUaguccucgaUCGGCauGCGgucacgccguAGCUGAUCGUCa -3'
miRNA:   3'- -UGCGG---------AGCCGgcUGC----------UCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 706 0.67 0.444014
Target:  5'- cUGCCgCGG-CGGCGAcGCUGcccUCGCCc -3'
miRNA:   3'- uGCGGaGCCgGCUGCU-CGACu--AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 24885 0.67 0.434617
Target:  5'- -gGCCUUGaCCGGCG-GCgUGggCGCCu -3'
miRNA:   3'- ugCGGAGCcGGCUGCuCG-ACuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 44475 0.67 0.434617
Target:  5'- -aGCgUCaGCCGcgGCGAGCU--UCGCCu -3'
miRNA:   3'- ugCGgAGcCGGC--UGCUCGAcuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 24578 0.67 0.425337
Target:  5'- -gGCUgCGGCUGACGAaccGCcGGUCgGCCa -3'
miRNA:   3'- ugCGGaGCCGGCUGCU---CGaCUAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 32328 0.67 0.416176
Target:  5'- -gGCCUCGG-CGACGgccaGGC-GGUCgGCCa -3'
miRNA:   3'- ugCGGAGCCgGCUGC----UCGaCUAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 40338 0.68 0.401772
Target:  5'- cGCGCagaUCGGUcugcacggucaCGACGAGCUGcaugcgggggcugccGUCGUCc -3'
miRNA:   3'- -UGCGg--AGCCG-----------GCUGCUCGAC---------------UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 5875 0.68 0.398221
Target:  5'- uGCGCUUCGGUgGuGCGGGCggcuuguucUGGUcaCGCCa -3'
miRNA:   3'- -UGCGGAGCCGgC-UGCUCG---------ACUA--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 457 0.76 0.112489
Target:  5'- cCGCCgcggCGGCCGacggcgaccggcGCGAGCUGcUCGUCg -3'
miRNA:   3'- uGCGGa---GCCGGC------------UGCUCGACuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 34241 0.76 0.10946
Target:  5'- gGC-CCUCGGggcgcUCGACcGGCUGAUCGCCg -3'
miRNA:   3'- -UGcGGAGCC-----GGCUGcUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 45393 0.76 0.106508
Target:  5'- uGCGCC-CGGCCGccCGAGCcGAUCGUg -3'
miRNA:   3'- -UGCGGaGCCGGCu-GCUCGaCUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 45880 0.79 0.066511
Target:  5'- cGCGCCgCGGCCGAgCGGGC-GAUCGaCCu -3'
miRNA:   3'- -UGCGGaGCCGGCU-GCUCGaCUAGC-GG- -5'
12892 3' -59.7 NC_003387.1 + 39594 0.81 0.048815
Target:  5'- uGCGCaccagcgaGGCCGACGAGUgGAUCGCCg -3'
miRNA:   3'- -UGCGgag-----CCGGCUGCUCGaCUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 40928 0.82 0.037828
Target:  5'- -gGCCUgaUGGaCGGCGAGCUGGUCGCCa -3'
miRNA:   3'- ugCGGA--GCCgGCUGCUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 18204 0.83 0.03376
Target:  5'- uGCGCCUCGGCgacgcgacgacCGGCGAcCUGGUCGCCc -3'
miRNA:   3'- -UGCGGAGCCG-----------GCUGCUcGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 11397 0.65 0.511726
Target:  5'- gGCGCCacgcuggccgcgaUCGGCCccGAgGuGCUG-UCGUCg -3'
miRNA:   3'- -UGCGG-------------AGCCGG--CUgCuCGACuAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.