Results 101 - 120 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 50239 | 0.71 | 0.231954 |
Target: 5'- gGCGCCUaccggaucgaggaggUGGCCGACGuGCgcaccgaggUGAUCGUg -3' miRNA: 3'- -UGCGGA---------------GCCGGCUGCuCG---------ACUAGCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 41811 | 0.71 | 0.247026 |
Target: 5'- cACGCCU-GGCagaucauCGACGAGCUGAgcauccuggUCgGCCa -3' miRNA: 3'- -UGCGGAgCCG-------GCUGCUCGACU---------AG-CGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 4555 | 0.71 | 0.247646 |
Target: 5'- gGCGaCUacgacaaGGCCGACaAGCUGcUCGCCg -3' miRNA: 3'- -UGCgGAg------CCGGCUGcUCGACuAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 9369 | 0.71 | 0.252018 |
Target: 5'- -aGCCgguggCGGCCGaggcgacccccgagGCGGGCaagacGAUCGCCg -3' miRNA: 3'- ugCGGa----GCCGGC--------------UGCUCGa----CUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 5332 | 0.71 | 0.260306 |
Target: 5'- aACGCCuaaUCGGCCGGUGAuGCUGAcgaGCUa -3' miRNA: 3'- -UGCGG---AGCCGGCUGCU-CGACUag-CGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 44651 | 0.72 | 0.196879 |
Target: 5'- -gGCCUCggcgauccuGGCCGAgGGGCUGccggugcUCGCCa -3' miRNA: 3'- ugCGGAG---------CCGGCUgCUCGACu------AGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 13558 | 0.73 | 0.186907 |
Target: 5'- -gGCCUgGGCagcccgauCGACGggcaggacgucGGCUGGUCGCCg -3' miRNA: 3'- ugCGGAgCCG--------GCUGC-----------UCGACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 6665 | 0.74 | 0.15962 |
Target: 5'- gACGCCgacgCGG-CGAuCGAGgUGAUUGCCg -3' miRNA: 3'- -UGCGGa---GCCgGCU-GCUCgACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 18204 | 0.83 | 0.03376 |
Target: 5'- uGCGCCUCGGCgacgcgacgacCGGCGAcCUGGUCGCCc -3' miRNA: 3'- -UGCGGAGCCG-----------GCUGCUcGACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 40928 | 0.82 | 0.037828 |
Target: 5'- -gGCCUgaUGGaCGGCGAGCUGGUCGCCa -3' miRNA: 3'- ugCGGA--GCCgGCUGCUCGACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 39594 | 0.81 | 0.048815 |
Target: 5'- uGCGCaccagcgaGGCCGACGAGUgGAUCGCCg -3' miRNA: 3'- -UGCGgag-----CCGGCUGCUCGaCUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 45880 | 0.79 | 0.066511 |
Target: 5'- cGCGCCgCGGCCGAgCGGGC-GAUCGaCCu -3' miRNA: 3'- -UGCGGaGCCGGCU-GCUCGaCUAGC-GG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 45393 | 0.76 | 0.106508 |
Target: 5'- uGCGCC-CGGCCGccCGAGCcGAUCGUg -3' miRNA: 3'- -UGCGGaGCCGGCu-GCUCGaCUAGCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 34241 | 0.76 | 0.10946 |
Target: 5'- gGC-CCUCGGggcgcUCGACcGGCUGAUCGCCg -3' miRNA: 3'- -UGcGGAGCC-----GGCUGcUCGACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 457 | 0.76 | 0.112489 |
Target: 5'- cCGCCgcggCGGCCGacggcgaccggcGCGAGCUGcUCGUCg -3' miRNA: 3'- uGCGGa---GCCGGC------------UGCUCGACuAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 32225 | 0.76 | 0.113723 |
Target: 5'- cGCGCUgcgCGaGCgCGACGAGCUGGccgaccgccuggccgUCGCCg -3' miRNA: 3'- -UGCGGa--GC-CG-GCUGCUCGACU---------------AGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 32159 | 0.75 | 0.128842 |
Target: 5'- cCGCCUgcaGGCacagauuGACGAGCUGAcCGCCg -3' miRNA: 3'- uGCGGAg--CCGg------CUGCUCGACUaGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 26609 | 0.74 | 0.143478 |
Target: 5'- aACGCCUCGG-CGGCGAaGCUGGaCGgCa -3' miRNA: 3'- -UGCGGAGCCgGCUGCU-CGACUaGCgG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 23889 | 0.74 | 0.151354 |
Target: 5'- -gGCU--GGCCGACGuGCUGcgCGCCg -3' miRNA: 3'- ugCGGagCCGGCUGCuCGACuaGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 4060 | 0.74 | 0.15962 |
Target: 5'- uACGCCUCGGUcaCGGCGuGCgGGUucUGCCg -3' miRNA: 3'- -UGCGGAGCCG--GCUGCuCGaCUA--GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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