miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 5' -56.7 NC_003387.1 + 21786 0.66 0.633134
Target:  5'- cGAcCAGGUCGgcgcgggCCGCGCuCGCCGAGGc -3'
miRNA:   3'- uCUuGUUCGGCg------GGCGUG-GUGGCUUC- -5'
12892 5' -56.7 NC_003387.1 + 42008 0.66 0.633134
Target:  5'- cGGugGGGCCGCCUG-GCCgugauggucGCCGAGc -3'
miRNA:   3'- uCUugUUCGGCGGGCgUGG---------UGGCUUc -5'
12892 5' -56.7 NC_003387.1 + 36453 0.66 0.633134
Target:  5'- cGAGC-AGCuCGCCCagGCGCaGCCGAu- -3'
miRNA:   3'- uCUUGuUCG-GCGGG--CGUGgUGGCUuc -5'
12892 5' -56.7 NC_003387.1 + 48049 0.66 0.633134
Target:  5'- -cGGCAAGCaguucaccCGCuaCCGCGCC-CCGAAGc -3'
miRNA:   3'- ucUUGUUCG--------GCG--GGCGUGGuGGCUUC- -5'
12892 5' -56.7 NC_003387.1 + 43120 0.66 0.626547
Target:  5'- cGGggUcAGCuCGCCCGUcuugagguugacgacACCGCuCGggGu -3'
miRNA:   3'- -UCuuGuUCG-GCGGGCG---------------UGGUG-GCuuC- -5'
12892 5' -56.7 NC_003387.1 + 49242 0.66 0.622155
Target:  5'- cGAGC-GGCUGCUCGa--CGCCGggGu -3'
miRNA:   3'- uCUUGuUCGGCGGGCgugGUGGCuuC- -5'
12892 5' -56.7 NC_003387.1 + 25451 0.66 0.622155
Target:  5'- cAGGGCGcGCUGCCCGCGUCGCgGc-- -3'
miRNA:   3'- -UCUUGUuCGGCGGGCGUGGUGgCuuc -5'
12892 5' -56.7 NC_003387.1 + 38181 0.66 0.622155
Target:  5'- cAGuACAAGCgcaacgGCCCG-GCCGCCGAGu -3'
miRNA:   3'- -UCuUGUUCGg-----CGGGCgUGGUGGCUUc -5'
12892 5' -56.7 NC_003387.1 + 41910 0.66 0.622155
Target:  5'- gAGGACGccAGCUcguGCCgUGUGCCGCCGAc- -3'
miRNA:   3'- -UCUUGU--UCGG---CGG-GCGUGGUGGCUuc -5'
12892 5' -56.7 NC_003387.1 + 47074 0.66 0.622155
Target:  5'- cGAGCAccaGGCgGCCCGCGCuCGUCGucGu -3'
miRNA:   3'- uCUUGU---UCGgCGGGCGUG-GUGGCuuC- -5'
12892 5' -56.7 NC_003387.1 + 19705 0.66 0.622155
Target:  5'- uGAuCGAGCCGCCCGUcgCGCCc--- -3'
miRNA:   3'- uCUuGUUCGGCGGGCGugGUGGcuuc -5'
12892 5' -56.7 NC_003387.1 + 39346 0.66 0.622155
Target:  5'- cGAGC-AGCuUGCCCaGC-UCGCCGAGGu -3'
miRNA:   3'- uCUUGuUCG-GCGGG-CGuGGUGGCUUC- -5'
12892 5' -56.7 NC_003387.1 + 1189 0.66 0.621058
Target:  5'- cGAACccacGGCCGaaCCCGCGCucgcgggCACCGAAc -3'
miRNA:   3'- uCUUGu---UCGGC--GGGCGUG-------GUGGCUUc -5'
12892 5' -56.7 NC_003387.1 + 21558 0.66 0.618863
Target:  5'- cGAACcAGCCcgGCCCgaccggcgcgggcuGCGCCAgCGggGc -3'
miRNA:   3'- uCUUGuUCGG--CGGG--------------CGUGGUgGCuuC- -5'
12892 5' -56.7 NC_003387.1 + 24203 0.66 0.614475
Target:  5'- cGGGCAGGCCgggauagcugccgacGCCCGCauGCCaggcgauGCCGAc- -3'
miRNA:   3'- uCUUGUUCGG---------------CGGGCG--UGG-------UGGCUuc -5'
12892 5' -56.7 NC_003387.1 + 46375 0.66 0.611185
Target:  5'- -----cAGCgGCCCGCugCGCCGc-- -3'
miRNA:   3'- ucuuguUCGgCGGGCGugGUGGCuuc -5'
12892 5' -56.7 NC_003387.1 + 50385 0.66 0.611185
Target:  5'- -cGAC-GGCgGCCuCGaCACCGCCGAGc -3'
miRNA:   3'- ucUUGuUCGgCGG-GC-GUGGUGGCUUc -5'
12892 5' -56.7 NC_003387.1 + 44464 0.66 0.611185
Target:  5'- -cGGCGAGCuuCGCCuCGUcgACCACCGGGu -3'
miRNA:   3'- ucUUGUUCG--GCGG-GCG--UGGUGGCUUc -5'
12892 5' -56.7 NC_003387.1 + 45644 0.66 0.600233
Target:  5'- cGAAgAucGGCCGCCUGg--CGCCGAAGg -3'
miRNA:   3'- uCUUgU--UCGGCGGGCgugGUGGCUUC- -5'
12892 5' -56.7 NC_003387.1 + 22629 0.66 0.600233
Target:  5'- -cGGCccuGGCCGCCCGCcgACgACUGAGc -3'
miRNA:   3'- ucUUGu--UCGGCGGGCG--UGgUGGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.