miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12893 3' -58.4 NC_003387.1 + 45068 0.66 0.5529
Target:  5'- -aGUGCCucacagcaccgccucGgCGGCAGCGGCGAUcgcgGCCu -3'
miRNA:   3'- gcCACGG---------------UgGCCGUUGCCGUUG----UGGu -5'
12893 3' -58.4 NC_003387.1 + 48770 0.66 0.5529
Target:  5'- gCGGUGCUcggcgcagccagcucGCCGcugaucGCcGCGGCGGCgGCCAu -3'
miRNA:   3'- -GCCACGG---------------UGGC------CGuUGCCGUUG-UGGU- -5'
12893 3' -58.4 NC_003387.1 + 20489 0.66 0.54972
Target:  5'- gGGUGggguuuccgcuccgaCACCGGCAacaGCGGUAgcgauGCGCCu -3'
miRNA:   3'- gCCACg--------------GUGGCCGU---UGCCGU-----UGUGGu -5'
12893 3' -58.4 NC_003387.1 + 29496 0.66 0.548662
Target:  5'- gCGG-GCCGCU-GCGGCGGCcuccuccuGCGCCc -3'
miRNA:   3'- -GCCaCGGUGGcCGUUGCCGu-------UGUGGu -5'
12893 3' -58.4 NC_003387.1 + 47268 0.66 0.548662
Target:  5'- cCGGcgGCCACCuGaGCcccGAgGGCGACcACCAg -3'
miRNA:   3'- -GCCa-CGGUGG-C-CG---UUgCCGUUG-UGGU- -5'
12893 3' -58.4 NC_003387.1 + 45852 0.66 0.548662
Target:  5'- ---gGCCugC-GCAGCGGCGggcagGCGCCAc -3'
miRNA:   3'- gccaCGGugGcCGUUGCCGU-----UGUGGU- -5'
12893 3' -58.4 NC_003387.1 + 27654 0.66 0.548662
Target:  5'- uGG-GUCAaCGGCGGCGGCAGUAUCu -3'
miRNA:   3'- gCCaCGGUgGCCGUUGCCGUUGUGGu -5'
12893 3' -58.4 NC_003387.1 + 28989 0.66 0.548662
Target:  5'- ---cGCCGCCGcGCAGCagauacgugagGGCGccGCGCCGg -3'
miRNA:   3'- gccaCGGUGGC-CGUUG-----------CCGU--UGUGGU- -5'
12893 3' -58.4 NC_003387.1 + 43197 0.66 0.547604
Target:  5'- aCGGcugGCCggguACgCGGCGAuCGGCGaggugacGCACCAc -3'
miRNA:   3'- -GCCa--CGG----UG-GCCGUU-GCCGU-------UGUGGU- -5'
12893 3' -58.4 NC_003387.1 + 8892 0.66 0.542324
Target:  5'- aGGUgaacGCCGCCauuuucGGCGAgGGCAACgugcucacguccgagGCCAc -3'
miRNA:   3'- gCCA----CGGUGG------CCGUUgCCGUUG---------------UGGU- -5'
12893 3' -58.4 NC_003387.1 + 31248 0.66 0.538113
Target:  5'- -cGUGCCGcCCGGCAccgaGGCAACcgaGCUg -3'
miRNA:   3'- gcCACGGU-GGCCGUug--CCGUUG---UGGu -5'
12893 3' -58.4 NC_003387.1 + 4167 0.66 0.538113
Target:  5'- aCGGcGCCGCgGGUcgcgagcauGCGGCAgaacccgcACGCCGu -3'
miRNA:   3'- -GCCaCGGUGgCCGu--------UGCCGU--------UGUGGU- -5'
12893 3' -58.4 NC_003387.1 + 29627 0.66 0.538113
Target:  5'- uCGGUGCacCGCaCGcGCGACGGCGcgaguaACCGg -3'
miRNA:   3'- -GCCACG--GUG-GC-CGUUGCCGUug----UGGU- -5'
12893 3' -58.4 NC_003387.1 + 36838 0.66 0.538113
Target:  5'- cCGaGUGCCGUCGcUGACGGUGACGCCc -3'
miRNA:   3'- -GC-CACGGUGGCcGUUGCCGUUGUGGu -5'
12893 3' -58.4 NC_003387.1 + 3661 0.66 0.538113
Target:  5'- -cGUGCC-CCGGCugAGCGGCcugaccGAgGCCGa -3'
miRNA:   3'- gcCACGGuGGCCG--UUGCCG------UUgUGGU- -5'
12893 3' -58.4 NC_003387.1 + 4633 0.66 0.537062
Target:  5'- gCGGccaagGCCGauaaggacaaggcCCGGCGccaaGCGGCcGACGCCGc -3'
miRNA:   3'- -GCCa----CGGU-------------GGCCGU----UGCCG-UUGUGGU- -5'
12893 3' -58.4 NC_003387.1 + 36750 0.66 0.537062
Target:  5'- gCGGUgaacgcgGCCAggUCGGCGAgcCGGUGAUGCCAc -3'
miRNA:   3'- -GCCA-------CGGU--GGCCGUU--GCCGUUGUGGU- -5'
12893 3' -58.4 NC_003387.1 + 16042 0.66 0.527634
Target:  5'- uCGGcGUCACUGGCGACGaCAugAUCc -3'
miRNA:   3'- -GCCaCGGUGGCCGUUGCcGUugUGGu -5'
12893 3' -58.4 NC_003387.1 + 19738 0.66 0.527634
Target:  5'- uGGUGCCGgguacgaaGGuCGGCGGCcuCGCCGg -3'
miRNA:   3'- gCCACGGUgg------CC-GUUGCCGuuGUGGU- -5'
12893 3' -58.4 NC_003387.1 + 36707 0.66 0.527634
Target:  5'- gGGcGCCGuCgGGCAucGCGGCGGCcagcaGCCGc -3'
miRNA:   3'- gCCaCGGU-GgCCGU--UGCCGUUG-----UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.