miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12893 5' -55.3 NC_003387.1 + 15663 0.66 0.676752
Target:  5'- gUCCGAGuGUUGCC-CGGCAGcAGCc-- -3'
miRNA:   3'- -GGGUUU-CGACGGcGCCGUCuUCGuaa -5'
12893 5' -55.3 NC_003387.1 + 30677 0.66 0.66556
Target:  5'- cCCCGAcccGGUcGCaC-CGGCGGggGCGUUu -3'
miRNA:   3'- -GGGUU---UCGaCG-GcGCCGUCuuCGUAA- -5'
12893 5' -55.3 NC_003387.1 + 29804 0.66 0.654334
Target:  5'- gCCCGcguAGCUGCCGUcgucGGCcuGGGCGc- -3'
miRNA:   3'- -GGGUu--UCGACGGCG----CCGucUUCGUaa -5'
12893 5' -55.3 NC_003387.1 + 35635 0.66 0.654334
Target:  5'- gCCGAGGCgGCCG-GGCGGGcacuGGCc-- -3'
miRNA:   3'- gGGUUUCGaCGGCgCCGUCU----UCGuaa -5'
12893 5' -55.3 NC_003387.1 + 36981 0.66 0.654334
Target:  5'- cCCCGAucaUGCUGCGGCuGAuccGGCGc- -3'
miRNA:   3'- -GGGUUucgACGGCGCCGuCU---UCGUaa -5'
12893 5' -55.3 NC_003387.1 + 21871 0.66 0.65321
Target:  5'- gCUCGccGAGCUGCCGCcGCGGucaacuuGAGCGc- -3'
miRNA:   3'- -GGGU--UUCGACGGCGcCGUC-------UUCGUaa -5'
12893 5' -55.3 NC_003387.1 + 52038 0.66 0.643087
Target:  5'- aUCAAGGCccugcguacccUGCCGgGGCuggGGGAGCAc- -3'
miRNA:   3'- gGGUUUCG-----------ACGGCgCCG---UCUUCGUaa -5'
12893 5' -55.3 NC_003387.1 + 46342 0.66 0.643087
Target:  5'- gCCCAcgcaAGGCgucGcCCGCGGCcGAGGCc-- -3'
miRNA:   3'- -GGGU----UUCGa--C-GGCGCCGuCUUCGuaa -5'
12893 5' -55.3 NC_003387.1 + 48789 0.66 0.643087
Target:  5'- gCUCGccGCUgaucGCCGCGGCGGcGGCc-- -3'
miRNA:   3'- -GGGUuuCGA----CGGCGCCGUCuUCGuaa -5'
12893 5' -55.3 NC_003387.1 + 45857 0.66 0.63183
Target:  5'- uCCUGcgcGAGCUGCUGCGGCuGcgcgccgcggccGAGCGg- -3'
miRNA:   3'- -GGGU---UUCGACGGCGCCGuC------------UUCGUaa -5'
12893 5' -55.3 NC_003387.1 + 5442 0.66 0.620573
Target:  5'- aCCgAGGGC-GCCGaCGGCGGccaAAGCGg- -3'
miRNA:   3'- -GGgUUUCGaCGGC-GCCGUC---UUCGUaa -5'
12893 5' -55.3 NC_003387.1 + 50401 0.66 0.620573
Target:  5'- aCCGccGAGCUGUacgucggGCGGCAGAucgucgccucGGCGUa -3'
miRNA:   3'- gGGU--UUCGACGg------CGCCGUCU----------UCGUAa -5'
12893 5' -55.3 NC_003387.1 + 13888 0.66 0.620573
Target:  5'- gCCUuGAGCUGCgGCGGCucgucGAGCc-- -3'
miRNA:   3'- -GGGuUUCGACGgCGCCGuc---UUCGuaa -5'
12893 5' -55.3 NC_003387.1 + 36084 0.67 0.609326
Target:  5'- cCCCGAGGCgcacGCCGaGuGCAuGAGCAUg -3'
miRNA:   3'- -GGGUUUCGa---CGGCgC-CGUcUUCGUAa -5'
12893 5' -55.3 NC_003387.1 + 11524 0.67 0.609326
Target:  5'- cCCCGgcggcGAGCUGCagCGCGGgCAcGAGCAc- -3'
miRNA:   3'- -GGGU-----UUCGACG--GCGCC-GUcUUCGUaa -5'
12893 5' -55.3 NC_003387.1 + 41295 0.67 0.609326
Target:  5'- aCCgCGGAGUUGCCGUgcuuauucgGGCAGcGGUAg- -3'
miRNA:   3'- -GG-GUUUCGACGGCG---------CCGUCuUCGUaa -5'
12893 5' -55.3 NC_003387.1 + 34702 0.67 0.5981
Target:  5'- gCCCGAGGCUG-CGCaGGUAGGcGGCc-- -3'
miRNA:   3'- -GGGUUUCGACgGCG-CCGUCU-UCGuaa -5'
12893 5' -55.3 NC_003387.1 + 18835 0.67 0.586904
Target:  5'- gCCGgggucggguauGAGCUGCCGCaGCGGGucGCGg- -3'
miRNA:   3'- gGGU-----------UUCGACGGCGcCGUCUu-CGUaa -5'
12893 5' -55.3 NC_003387.1 + 11841 0.68 0.542606
Target:  5'- aUCAAGGCcGCCugggacaugaucGCGGCGGggGCc-- -3'
miRNA:   3'- gGGUUUCGaCGG------------CGCCGUCuuCGuaa -5'
12893 5' -55.3 NC_003387.1 + 412 0.68 0.531694
Target:  5'- cCCCGAGGCUG-UGCuGGCGGuGGCu-- -3'
miRNA:   3'- -GGGUUUCGACgGCG-CCGUCuUCGuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.