Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 12894 | 3' | -57.9 | NC_003387.1 | + | 35698 | 0.66 | 0.525745 |
|
Target: 5'- gGCCG-CCUCGGCGGGcuccucGGGGc- -3' miRNA: 3'- -UGGCuGGAGCCGCCCucuuu-CCUCuu -5' |
|||||||
| 12894 | 3' | -57.9 | NC_003387.1 | + | 22842 | 0.67 | 0.504882 |
|
Target: 5'- uGCCGACCUCGcgccguuucGCGagguauccgcaGGuGAGAGGGGGu -3' miRNA: 3'- -UGGCUGGAGC---------CGC-----------CCuCUUUCCUCUu -5' |
|||||||
| 12894 | 3' | -57.9 | NC_003387.1 | + | 32273 | 0.67 | 0.504882 |
|
Target: 5'- gGCCGACaa-GGCGuGGGGGcgcGAGGAGc- -3' miRNA: 3'- -UGGCUGgagCCGC-CCUCU---UUCCUCuu -5' |
|||||||
| 12894 | 3' | -57.9 | NC_003387.1 | + | 2053 | 0.69 | 0.35147 |
|
Target: 5'- aGCUGGCCgcggUGGCGGcgccauguucguguGAGAGGGGGGGg -3' miRNA: 3'- -UGGCUGGa---GCCGCC--------------CUCUUUCCUCUu -5' |
|||||||
| 12894 | 3' | -57.9 | NC_003387.1 | + | 5959 | 1.06 | 0.000825 |
|
Target: 5'- gACCGACCUCGGCGGGAGAAAGGAGAAa -3' miRNA: 3'- -UGGCUGGAGCCGCCCUCUUUCCUCUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home