miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12894 5' -53.9 NC_003387.1 + 12432 0.68 0.701835
Target:  5'- aGCUGAUuagg-GCGCuGCCGAGGUUc -3'
miRNA:   3'- cCGACUGuaaagUGCG-CGGCUCCAGc -5'
12894 5' -53.9 NC_003387.1 + 18472 0.68 0.701835
Target:  5'- cGGUUGaACAgg-UAgGCGCCGAGGa-- -3'
miRNA:   3'- -CCGAC-UGUaaaGUgCGCGGCUCCagc -5'
12894 5' -53.9 NC_003387.1 + 5933 0.68 0.680021
Target:  5'- gGGCUGACAacaggUUUC-CGCG-CGAGGa-- -3'
miRNA:   3'- -CCGACUGU-----AAAGuGCGCgGCUCCagc -5'
12894 5' -53.9 NC_003387.1 + 35680 0.68 0.680021
Target:  5'- uGGCUGAgCGgg-CACGUGUgGGGGcCGu -3'
miRNA:   3'- -CCGACU-GUaaaGUGCGCGgCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 37186 0.68 0.680021
Target:  5'- cGGCcGACGUcgagcacgUCgaggGCGCGCacggCGAGGUCGa -3'
miRNA:   3'- -CCGaCUGUAa-------AG----UGCGCG----GCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 7758 0.68 0.669039
Target:  5'- cGGCgUGAacccgaACGgGCCGAGGUUGu -3'
miRNA:   3'- -CCG-ACUguaaagUGCgCGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 16967 0.68 0.669039
Target:  5'- uGCUGGCGUUUCACcugGCGCgGGcGGgcugCGu -3'
miRNA:   3'- cCGACUGUAAAGUG---CGCGgCU-CCa---GC- -5'
12894 5' -53.9 NC_003387.1 + 26821 0.68 0.658023
Target:  5'- cGCUGGgggUAUgcCGCuCGCCGGGGUCGc -3'
miRNA:   3'- cCGACU---GUAaaGUGcGCGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 15815 0.69 0.635927
Target:  5'- gGGCUGACGcg-CACaGCGucaCCGAGG-CGa -3'
miRNA:   3'- -CCGACUGUaaaGUG-CGC---GGCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 29434 0.69 0.602783
Target:  5'- cGCUGACgg-UCAgGuCGCCGAGGa-- -3'
miRNA:   3'- cCGACUGuaaAGUgC-GCGGCUCCagc -5'
12894 5' -53.9 NC_003387.1 + 4181 0.69 0.602783
Target:  5'- cGGCcGACuuguaCACgGCGCCGcGGGUCGc -3'
miRNA:   3'- -CCGaCUGuaaa-GUG-CGCGGC-UCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 41038 0.69 0.602783
Target:  5'- cGGC-GACAUUgacaccCACGCgaucGCCGAGGcCGc -3'
miRNA:   3'- -CCGaCUGUAAa-----GUGCG----CGGCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 17334 0.69 0.602783
Target:  5'- cGgUGGCGcUUCuGCGUGCCGcaAGGUCGg -3'
miRNA:   3'- cCgACUGUaAAG-UGCGCGGC--UCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 7811 0.7 0.580797
Target:  5'- aGCUG-CAacgcCugGCgGCCGAGGUCGc -3'
miRNA:   3'- cCGACuGUaaa-GugCG-CGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 22972 0.7 0.579702
Target:  5'- cGUUGGCcg-UCGCGUcggucuuGCCGGGGUCa -3'
miRNA:   3'- cCGACUGuaaAGUGCG-------CGGCUCCAGc -5'
12894 5' -53.9 NC_003387.1 + 27239 0.7 0.569865
Target:  5'- aGCUGACA---CGCGCgGUCGAGG-CGg -3'
miRNA:   3'- cCGACUGUaaaGUGCG-CGGCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 30215 0.7 0.558983
Target:  5'- cGCcGACGUcgagCGCGcCGCCGAGGcCGu -3'
miRNA:   3'- cCGaCUGUAaa--GUGC-GCGGCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 35386 0.7 0.558983
Target:  5'- cGcCUGGCAUgcgUUCACGCugGCCGAGuucGUCGa -3'
miRNA:   3'- cC-GACUGUA---AAGUGCG--CGGCUC---CAGC- -5'
12894 5' -53.9 NC_003387.1 + 10442 0.7 0.548161
Target:  5'- cGGCgGGCAUcgacaGCGCGCUGucGGUCGc -3'
miRNA:   3'- -CCGaCUGUAaag--UGCGCGGCu-CCAGC- -5'
12894 5' -53.9 NC_003387.1 + 27418 0.71 0.526724
Target:  5'- cGCUGGCAc--CAcCGCGCCGAcGUCGc -3'
miRNA:   3'- cCGACUGUaaaGU-GCGCGGCUcCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.