miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12897 3' -57.1 NC_003387.1 + 43841 0.66 0.599561
Target:  5'- cUGgUGUCGU-CCUGGUaCUGCGcggUGCc -3'
miRNA:   3'- -ACgACAGCAgGGACCGcGACGCa--AUG- -5'
12897 3' -57.1 NC_003387.1 + 26659 0.66 0.56677
Target:  5'- cGCUacGUCGagaaCCgGGUGCUGCGUuucgUGCa -3'
miRNA:   3'- aCGA--CAGCag--GGaCCGCGACGCA----AUG- -5'
12897 3' -57.1 NC_003387.1 + 5996 0.66 0.545162
Target:  5'- cUGUUGUCaGcCCCcGGCGCguaaGCGgcGCa -3'
miRNA:   3'- -ACGACAG-CaGGGaCCGCGa---CGCaaUG- -5'
12897 3' -57.1 NC_003387.1 + 42117 0.67 0.492452
Target:  5'- cGCgGUCGaucuuggcgCCCUGGCGCUcgGCGa--- -3'
miRNA:   3'- aCGaCAGCa--------GGGACCGCGA--CGCaaug -5'
12897 3' -57.1 NC_003387.1 + 38619 0.68 0.472024
Target:  5'- cGCUGuUCGgCCCgcaggccgcgcUGGCGCUGCaGUUccgGCg -3'
miRNA:   3'- aCGAC-AGCaGGG-----------ACCGCGACG-CAA---UG- -5'
12897 3' -57.1 NC_003387.1 + 16429 0.68 0.452033
Target:  5'- gGUUGUCcaagCCCUcGGCGCcGgGUUGCu -3'
miRNA:   3'- aCGACAGca--GGGA-CCGCGaCgCAAUG- -5'
12897 3' -57.1 NC_003387.1 + 23147 0.68 0.442212
Target:  5'- gUGCUGUCGgCCUU-GCGCacgGCGUagUGCg -3'
miRNA:   3'- -ACGACAGCaGGGAcCGCGa--CGCA--AUG- -5'
12897 3' -57.1 NC_003387.1 + 44612 0.68 0.432513
Target:  5'- cGCcGUCGggCCgUGGCGCgaGCGUgugGCc -3'
miRNA:   3'- aCGaCAGCa-GGgACCGCGa-CGCAa--UG- -5'
12897 3' -57.1 NC_003387.1 + 16966 0.71 0.29581
Target:  5'- gUGCUGgCGUUucaCCUGGCGCggGCGggcUGCg -3'
miRNA:   3'- -ACGACaGCAG---GGACCGCGa-CGCa--AUG- -5'
12897 3' -57.1 NC_003387.1 + 30369 0.75 0.165869
Target:  5'- aUGCgcGUCGUCCCaGGCGCgggccgcgGCGUUGg -3'
miRNA:   3'- -ACGa-CAGCAGGGaCCGCGa-------CGCAAUg -5'
12897 3' -57.1 NC_003387.1 + 34001 0.76 0.13598
Target:  5'- cGCUGcUCGacgagugccgcgCCCUGGCGCUGCGcgACc -3'
miRNA:   3'- aCGAC-AGCa-----------GGGACCGCGACGCaaUG- -5'
12897 3' -57.1 NC_003387.1 + 6542 1.1 0.000465
Target:  5'- cUGCUGUCGUCCCUGGCGCUGCGUUACg -3'
miRNA:   3'- -ACGACAGCAGGGACCGCGACGCAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.