Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12898 | 3' | -56.8 | NC_003387.1 | + | 44511 | 0.66 | 0.648391 |
Target: 5'- -cAGUugcgUCUguUCGuGCCGGGCCGCCCggCGc -3' miRNA: 3'- guUCA----AGG--AGC-UGGUCCGGUGGGa-GC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 31171 | 0.66 | 0.648391 |
Target: 5'- -cGGUUgCCUCGguGCCGGGCgGCaCgUCGa -3' miRNA: 3'- guUCAA-GGAGC--UGGUCCGgUG-GgAGC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 40777 | 0.66 | 0.648391 |
Target: 5'- gAGGUgcgCCUCGACCAagaucCCGCgCUCGc -3' miRNA: 3'- gUUCAa--GGAGCUGGUcc---GGUGgGAGC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 21796 | 0.66 | 0.626561 |
Target: 5'- aCGAuUUCCacgaccaggUCGGCgCGGGCCGCgCUCGc -3' miRNA: 3'- -GUUcAAGG---------AGCUG-GUCCGGUGgGAGC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 43916 | 0.66 | 0.626561 |
Target: 5'- -uGGUgcaccgCCcCGACCucGGCCucGCCCUCGc -3' miRNA: 3'- guUCAa-----GGaGCUGGu-CCGG--UGGGAGC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 39115 | 0.66 | 0.615647 |
Target: 5'- aCGAG-UCgUCGACC-GGCCGCCaccaCGg -3' miRNA: 3'- -GUUCaAGgAGCUGGuCCGGUGGga--GC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 19254 | 0.66 | 0.593873 |
Target: 5'- --cGUgCCguuagCGACCgugcGGGCCgcGCCCUCGa -3' miRNA: 3'- guuCAaGGa----GCUGG----UCCGG--UGGGAGC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 26001 | 0.67 | 0.572225 |
Target: 5'- -----gCCUCGACgAGGCCGCgCUgGu -3' miRNA: 3'- guucaaGGAGCUGgUCCGGUGgGAgC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 9445 | 0.67 | 0.572225 |
Target: 5'- gGGGUcgCCUCGGCC--GCCACCggCUCGu -3' miRNA: 3'- gUUCAa-GGAGCUGGucCGGUGG--GAGC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 26230 | 0.67 | 0.572225 |
Target: 5'- gGGGUugacUCCUCGGggUCAGGCCGCgCgagCGg -3' miRNA: 3'- gUUCA----AGGAGCU--GGUCCGGUGgGa--GC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 6345 | 0.67 | 0.572225 |
Target: 5'- gCAAGaagCUCGACCAGGCCgucAUuuUCGg -3' miRNA: 3'- -GUUCaagGAGCUGGUCCGG---UGggAGC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 45666 | 0.67 | 0.57007 |
Target: 5'- gAAGgugUCCggucagggcgagCGGCCGGGCCugCCgUUGa -3' miRNA: 3'- gUUCa--AGGa-----------GCUGGUCCGGugGG-AGC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 19916 | 0.67 | 0.55077 |
Target: 5'- gCAAGaccUCaagaUCGACCAGGCUgGCaCCUCGa -3' miRNA: 3'- -GUUCa--AGg---AGCUGGUCCGG-UG-GGAGC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 16017 | 0.67 | 0.55077 |
Target: 5'- gCAGGcgCgagUCGGCCGGGCgGCCUUCu -3' miRNA: 3'- -GUUCaaGg--AGCUGGUCCGgUGGGAGc -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 49809 | 0.67 | 0.55077 |
Target: 5'- aCGAGagCCUCGcCCGcGGCCugCCgCGc -3' miRNA: 3'- -GUUCaaGGAGCuGGU-CCGGugGGaGC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 125 | 0.67 | 0.55077 |
Target: 5'- -----gCCUCGAUgcGGUCGCCCUCGc -3' miRNA: 3'- guucaaGGAGCUGguCCGGUGGGAGC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 19078 | 0.68 | 0.519078 |
Target: 5'- aCAGGUUCgUCGAggcCCAcGCCGCCagCUCGu -3' miRNA: 3'- -GUUCAAGgAGCU---GGUcCGGUGG--GAGC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 27344 | 0.68 | 0.487115 |
Target: 5'- --cGUucUCCUCGcgcgaccaggcauGCCGGGCCG-CCUCGa -3' miRNA: 3'- guuCA--AGGAGC-------------UGGUCCGGUgGGAGC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 13248 | 0.69 | 0.448284 |
Target: 5'- -----gCgUCGGCCAGGUCGCgCUCGg -3' miRNA: 3'- guucaaGgAGCUGGUCCGGUGgGAGC- -5' |
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12898 | 3' | -56.8 | NC_003387.1 | + | 12085 | 0.69 | 0.448284 |
Target: 5'- gCAuGcgCCgugUCGACCAGGCCGCgccacacguCCUCGa -3' miRNA: 3'- -GUuCaaGG---AGCUGGUCCGGUG---------GGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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