miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12898 3' -56.8 NC_003387.1 + 13248 0.69 0.448284
Target:  5'- -----gCgUCGGCCAGGUCGCgCUCGg -3'
miRNA:   3'- guucaaGgAGCUGGUCCGGUGgGAGC- -5'
12898 3' -56.8 NC_003387.1 + 40724 0.69 0.438605
Target:  5'- aCAAGUgcaaCCU-GACCAaGCgCGCCCUCGa -3'
miRNA:   3'- -GUUCAa---GGAgCUGGUcCG-GUGGGAGC- -5'
12898 3' -56.8 NC_003387.1 + 25441 0.69 0.429047
Target:  5'- -----cCCUCGACCucGCCGCUCUUGg -3'
miRNA:   3'- guucaaGGAGCUGGucCGGUGGGAGC- -5'
12898 3' -56.8 NC_003387.1 + 40596 0.69 0.419612
Target:  5'- gCAGGUcgcUgCUCGguGCCGGGCCACCggCGg -3'
miRNA:   3'- -GUUCA---AgGAGC--UGGUCCGGUGGgaGC- -5'
12898 3' -56.8 NC_003387.1 + 29770 0.7 0.410305
Target:  5'- cCGAGcgCCUCGACCucGGCCA-CgUCGa -3'
miRNA:   3'- -GUUCaaGGAGCUGGu-CCGGUgGgAGC- -5'
12898 3' -56.8 NC_003387.1 + 39194 0.7 0.401126
Target:  5'- --cGUgcagCUCGACCAGGCC-CCCgCGg -3'
miRNA:   3'- guuCAag--GAGCUGGUCCGGuGGGaGC- -5'
12898 3' -56.8 NC_003387.1 + 12537 0.7 0.383167
Target:  5'- cCAGGc-CCgCGGCCAGGCCGCcgccagcgaaCCUCGg -3'
miRNA:   3'- -GUUCaaGGaGCUGGUCCGGUG----------GGAGC- -5'
12898 3' -56.8 NC_003387.1 + 25943 0.7 0.36575
Target:  5'- cCAGGccgCUCGGCaacugCAGGCCACCCUUGc -3'
miRNA:   3'- -GUUCaagGAGCUG-----GUCCGGUGGGAGC- -5'
12898 3' -56.8 NC_003387.1 + 1725 0.71 0.357248
Target:  5'- ----cUCCUCGACguGGCgGCCgUCGu -3'
miRNA:   3'- guucaAGGAGCUGguCCGgUGGgAGC- -5'
12898 3' -56.8 NC_003387.1 + 2369 0.71 0.340666
Target:  5'- -cAGUUCCUUGACUucgucgcuGG-CGCCCUCGg -3'
miRNA:   3'- guUCAAGGAGCUGGu-------CCgGUGGGAGC- -5'
12898 3' -56.8 NC_003387.1 + 5494 0.71 0.340666
Target:  5'- uCGAGUugUCCUCGG-CGGGCUugCCUuCGg -3'
miRNA:   3'- -GUUCA--AGGAGCUgGUCCGGugGGA-GC- -5'
12898 3' -56.8 NC_003387.1 + 17284 0.71 0.324647
Target:  5'- -cGGUguaucugCCUCGGCCucGGCCACUUUCGc -3'
miRNA:   3'- guUCAa------GGAGCUGGu-CCGGUGGGAGC- -5'
12898 3' -56.8 NC_003387.1 + 50848 0.74 0.230611
Target:  5'- uCGGGUUCCugcagcgcaagacgcUCGAUUGGGUCGCCCUUGa -3'
miRNA:   3'- -GUUCAAGG---------------AGCUGGUCCGGUGGGAGC- -5'
12898 3' -56.8 NC_003387.1 + 30121 0.78 0.122697
Target:  5'- gCAAGggccugagCUUCGACCguggccgcaccgAGGCCACCCUCGa -3'
miRNA:   3'- -GUUCaa------GGAGCUGG------------UCCGGUGGGAGC- -5'
12898 3' -56.8 NC_003387.1 + 41805 0.79 0.103763
Target:  5'- cCGGGUgacgUCCUCGGCCGugccccGGCCGCCUUCGu -3'
miRNA:   3'- -GUUCA----AGGAGCUGGU------CCGGUGGGAGC- -5'
12898 3' -56.8 NC_003387.1 + 6738 1.09 0.000705
Target:  5'- uCAAGUUCCUCGACCAGGCCACCCUCGg -3'
miRNA:   3'- -GUUCAAGGAGCUGGUCCGGUGGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.