miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12898 5' -57.2 NC_003387.1 + 30154 0.66 0.584697
Target:  5'- aGGCCAcccUCGACCaGGCCc-GCGCGAu -3'
miRNA:   3'- -UUGGUcu-AGUUGGaCCGGcuCGCGCU- -5'
12898 5' -57.2 NC_003387.1 + 10239 0.66 0.584697
Target:  5'- cGACgC-GAUgAGCC-GcGCCGAGCGCGGg -3'
miRNA:   3'- -UUG-GuCUAgUUGGaC-CGGCUCGCGCU- -5'
12898 5' -57.2 NC_003387.1 + 12001 0.66 0.584697
Target:  5'- cGugUGGcgCGGCCUGGUCGAcacgGCGCa- -3'
miRNA:   3'- -UugGUCuaGUUGGACCGGCU----CGCGcu -5'
12898 5' -57.2 NC_003387.1 + 33563 0.66 0.573764
Target:  5'- aGACaAGGcauUCGGCCUuGCUGAGCGCGu -3'
miRNA:   3'- -UUGgUCU---AGUUGGAcCGGCUCGCGCu -5'
12898 5' -57.2 NC_003387.1 + 30750 0.66 0.573764
Target:  5'- cGCCGGugCGACCgGGUCGGGgGCGu -3'
miRNA:   3'- uUGGUCuaGUUGGaCCGGCUCgCGCu -5'
12898 5' -57.2 NC_003387.1 + 30244 0.66 0.573764
Target:  5'- uGCCcgaggcGAUCGcgcggGCCUGGUCGAGgGUGGc -3'
miRNA:   3'- uUGGu-----CUAGU-----UGGACCGGCUCgCGCU- -5'
12898 5' -57.2 NC_003387.1 + 5840 0.66 0.573764
Target:  5'- cGCCAGGcgaUCAGCUcgucGGCCGAG-GCGu -3'
miRNA:   3'- uUGGUCU---AGUUGGa---CCGGCUCgCGCu -5'
12898 5' -57.2 NC_003387.1 + 45406 0.66 0.562879
Target:  5'- uGCaCGGAUCGGCCgcGGCCGGGUcuuGCu- -3'
miRNA:   3'- uUG-GUCUAGUUGGa-CCGGCUCG---CGcu -5'
12898 5' -57.2 NC_003387.1 + 45288 0.66 0.560709
Target:  5'- cGCCAcGAUCGGCCgcgggucgaacgGGCCGGGCa--- -3'
miRNA:   3'- uUGGU-CUAGUUGGa-----------CCGGCUCGcgcu -5'
12898 5' -57.2 NC_003387.1 + 45032 0.66 0.556374
Target:  5'- uGAUCAaGUCAGaCCUGaccgaggagcaggucGCCGAGCGCGu -3'
miRNA:   3'- -UUGGUcUAGUU-GGAC---------------CGGCUCGCGCu -5'
12898 5' -57.2 NC_003387.1 + 19321 0.66 0.55205
Target:  5'- uGCCGacGAUguugagcACCUGGCCcGGCGCGAc -3'
miRNA:   3'- uUGGU--CUAgu-----UGGACCGGcUCGCGCU- -5'
12898 5' -57.2 NC_003387.1 + 13022 0.66 0.55205
Target:  5'- cGCCAGAcgcCGACgUGgcacuGCCGAGCGCcGAc -3'
miRNA:   3'- uUGGUCUa--GUUGgAC-----CGGCUCGCG-CU- -5'
12898 5' -57.2 NC_003387.1 + 36789 0.66 0.55205
Target:  5'- aGGCCGGGcagcUCGACCgGGUCGAGauucagcuugccCGCGGu -3'
miRNA:   3'- -UUGGUCU----AGUUGGaCCGGCUC------------GCGCU- -5'
12898 5' -57.2 NC_003387.1 + 34393 0.66 0.55205
Target:  5'- --aCGGGUCGGCCgcgGGC--AGCGCGGg -3'
miRNA:   3'- uugGUCUAGUUGGa--CCGgcUCGCGCU- -5'
12898 5' -57.2 NC_003387.1 + 2657 0.66 0.55205
Target:  5'- cGGCCAGGcgUCGACCgacgGGUCG-GCGUa- -3'
miRNA:   3'- -UUGGUCU--AGUUGGa---CCGGCuCGCGcu -5'
12898 5' -57.2 NC_003387.1 + 31111 0.66 0.550971
Target:  5'- cGCCGGugcCGugCUGGCCGccgccccGGCGCa- -3'
miRNA:   3'- uUGGUCua-GUugGACCGGC-------UCGCGcu -5'
12898 5' -57.2 NC_003387.1 + 3209 0.66 0.541285
Target:  5'- uGCCGGu--GACCUGaGCCGGgcugaucuGCGCGAc -3'
miRNA:   3'- uUGGUCuagUUGGAC-CGGCU--------CGCGCU- -5'
12898 5' -57.2 NC_003387.1 + 48287 0.66 0.541285
Target:  5'- cGugCGGGUC-ACCUcGGCCGccgccgccGGUGCGGg -3'
miRNA:   3'- -UugGUCUAGuUGGA-CCGGC--------UCGCGCU- -5'
12898 5' -57.2 NC_003387.1 + 23803 0.66 0.530591
Target:  5'- cGCUGGAUC-GCCUGcGCCGAGuCGUu- -3'
miRNA:   3'- uUGGUCUAGuUGGAC-CGGCUC-GCGcu -5'
12898 5' -57.2 NC_003387.1 + 21585 0.66 0.53059
Target:  5'- cGCgCGGcAUCAGCgaGGCCGA-CGCGGc -3'
miRNA:   3'- uUG-GUC-UAGUUGgaCCGGCUcGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.