miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12899 3' -55 NC_003387.1 + 49898 0.65 0.728529
Target:  5'- -cGCUCGccGGGCGCgGCAGG--CCGCGg -3'
miRNA:   3'- guUGAGC--CUCGUGgCGUUCuaGGCGU- -5'
12899 3' -55 NC_003387.1 + 3954 0.65 0.728529
Target:  5'- aCGACcCGGuggucGCGCUGCAAGGcUCgGCGa -3'
miRNA:   3'- -GUUGaGCCu----CGUGGCGUUCU-AGgCGU- -5'
12899 3' -55 NC_003387.1 + 28008 0.66 0.717772
Target:  5'- ---aUCGaGGGCACCGaCGAGcgCgGCAa -3'
miRNA:   3'- guugAGC-CUCGUGGC-GUUCuaGgCGU- -5'
12899 3' -55 NC_003387.1 + 20564 0.66 0.717772
Target:  5'- gGugUCGGAGCGgaaaccccacCCGCG-GAacgCCGCGc -3'
miRNA:   3'- gUugAGCCUCGU----------GGCGUuCUa--GGCGU- -5'
12899 3' -55 NC_003387.1 + 52789 0.66 0.717772
Target:  5'- -----aGGGGCGCCGCGAucGUUCGCGg -3'
miRNA:   3'- guugagCCUCGUGGCGUUc-UAGGCGU- -5'
12899 3' -55 NC_003387.1 + 33835 0.66 0.716692
Target:  5'- -cGCUCGcGGCGCCGCcguugcccuugccGGGGUgCCGCu -3'
miRNA:   3'- guUGAGCcUCGUGGCG-------------UUCUA-GGCGu -5'
12899 3' -55 NC_003387.1 + 52731 0.66 0.706929
Target:  5'- -cGCUCGaucGGCGCCGCGGGcGUuuGCu -3'
miRNA:   3'- guUGAGCc--UCGUGGCGUUC-UAggCGu -5'
12899 3' -55 NC_003387.1 + 17794 0.66 0.706929
Target:  5'- cCAugUCGGAGCGCaCGCccGAga-GCAa -3'
miRNA:   3'- -GUugAGCCUCGUG-GCGuuCUaggCGU- -5'
12899 3' -55 NC_003387.1 + 48216 0.66 0.696012
Target:  5'- --cCUCGGuggcGCGCUGCGcgcGGGUCUGCc -3'
miRNA:   3'- guuGAGCCu---CGUGGCGU---UCUAGGCGu -5'
12899 3' -55 NC_003387.1 + 5215 0.66 0.696012
Target:  5'- --cCUCGG-GUACCGCAcGAUgCUGCu -3'
miRNA:   3'- guuGAGCCuCGUGGCGUuCUA-GGCGu -5'
12899 3' -55 NC_003387.1 + 36714 0.66 0.685031
Target:  5'- -cACUCgGGGGCGCCGuCGGGcaUCGCGg -3'
miRNA:   3'- guUGAG-CCUCGUGGC-GUUCuaGGCGU- -5'
12899 3' -55 NC_003387.1 + 5561 0.66 0.685031
Target:  5'- cCAGCUCaaGGCugacGCCGCcgagcuggcaAAGAUCCGCGa -3'
miRNA:   3'- -GUUGAGccUCG----UGGCG----------UUCUAGGCGU- -5'
12899 3' -55 NC_003387.1 + 1843 0.66 0.673998
Target:  5'- uCAGCUCGG-GCGCCaGCGccg-CCGCc -3'
miRNA:   3'- -GUUGAGCCuCGUGG-CGUucuaGGCGu -5'
12899 3' -55 NC_003387.1 + 36011 0.66 0.673998
Target:  5'- aCGGCgaggucgUGGuGCGCCGCAagcGGAUCaagaGCAa -3'
miRNA:   3'- -GUUGa------GCCuCGUGGCGU---UCUAGg---CGU- -5'
12899 3' -55 NC_003387.1 + 46932 0.67 0.662925
Target:  5'- gAGC-CGG-GCACCGaggugucGAUCCGCGg -3'
miRNA:   3'- gUUGaGCCuCGUGGCguu----CUAGGCGU- -5'
12899 3' -55 NC_003387.1 + 34330 0.67 0.648488
Target:  5'- cCGACUCGGcgaucagccggucgAGCGCCcCGAGggCCuGCAg -3'
miRNA:   3'- -GUUGAGCC--------------UCGUGGcGUUCuaGG-CGU- -5'
12899 3' -55 NC_003387.1 + 17327 0.67 0.629572
Target:  5'- uGACcugCGGuGGCgcuucugcguGCCGCAAGGUCgGCAa -3'
miRNA:   3'- gUUGa--GCC-UCG----------UGGCGUUCUAGgCGU- -5'
12899 3' -55 NC_003387.1 + 28166 0.68 0.607331
Target:  5'- cCAGCUCGGcuCGCCGUAuuGGUUCGUc -3'
miRNA:   3'- -GUUGAGCCucGUGGCGUu-CUAGGCGu -5'
12899 3' -55 NC_003387.1 + 25171 0.68 0.607331
Target:  5'- uCGGCUCGGcgcgguggccccGGCGCCGCcg---CCGCGg -3'
miRNA:   3'- -GUUGAGCC------------UCGUGGCGuucuaGGCGU- -5'
12899 3' -55 NC_003387.1 + 30253 0.68 0.607331
Target:  5'- aCGACgccgCGGucgucgAGUACCGCGAGGccaacgCCGCGg -3'
miRNA:   3'- -GUUGa---GCC------UCGUGGCGUUCUa-----GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.