miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12899 3' -55 NC_003387.1 + 7763 1.09 0.001002
Target:  5'- cCAACUCGGAGCACCGCAAGAUCCGCAa -3'
miRNA:   3'- -GUUGAGCCUCGUGGCGUUCUAGGCGU- -5'
12899 3' -55 NC_003387.1 + 42833 0.78 0.141168
Target:  5'- cCGACUCGGGGCACCacGCAGccGAUCCGa- -3'
miRNA:   3'- -GUUGAGCCUCGUGG--CGUU--CUAGGCgu -5'
12899 3' -55 NC_003387.1 + 46964 0.74 0.25628
Target:  5'- aCGAcCUCGGGcuGCGCCGCAGGugggggcgCCGCAa -3'
miRNA:   3'- -GUU-GAGCCU--CGUGGCGUUCua------GGCGU- -5'
12899 3' -55 NC_003387.1 + 218 0.74 0.284076
Target:  5'- cCAGCUCGGcGGCGCggauCGCGAGGgcgaCCGCAu -3'
miRNA:   3'- -GUUGAGCC-UCGUG----GCGUUCUa---GGCGU- -5'
12899 3' -55 NC_003387.1 + 1169 0.74 0.284076
Target:  5'- -cGCUCGcGGGCACCGaaCAGGAUgCGCGa -3'
miRNA:   3'- guUGAGC-CUCGUGGC--GUUCUAgGCGU- -5'
12899 3' -55 NC_003387.1 + 37452 0.73 0.322101
Target:  5'- cCGACagCGGGGCGCCGCcgcccgacAGGUgCCGCAg -3'
miRNA:   3'- -GUUGa-GCCUCGUGGCGu-------UCUA-GGCGU- -5'
12899 3' -55 NC_003387.1 + 49817 0.71 0.409096
Target:  5'- -cGCUCGGGGCcUCGCGAGGcgCUGCu -3'
miRNA:   3'- guUGAGCCUCGuGGCGUUCUa-GGCGu -5'
12899 3' -55 NC_003387.1 + 38108 0.7 0.488376
Target:  5'- ---aUCGGGGCGCCGUcgccgcGAUCCGUu -3'
miRNA:   3'- guugAGCCUCGUGGCGuu----CUAGGCGu -5'
12899 3' -55 NC_003387.1 + 52485 0.69 0.509323
Target:  5'- aCAACaUUGGGGCggcucACCGCAAGugcaaCCGCGa -3'
miRNA:   3'- -GUUG-AGCCUCG-----UGGCGUUCua---GGCGU- -5'
12899 3' -55 NC_003387.1 + 10021 0.69 0.509323
Target:  5'- --cCUCGGuGCGCUGCcaguuguuGAUCCGUAg -3'
miRNA:   3'- guuGAGCCuCGUGGCGuu------CUAGGCGU- -5'
12899 3' -55 NC_003387.1 + 25548 0.69 0.519937
Target:  5'- cCGACa-GGAuGCGCCGCAuGAgCCGCGa -3'
miRNA:   3'- -GUUGagCCU-CGUGGCGUuCUaGGCGU- -5'
12899 3' -55 NC_003387.1 + 43133 0.69 0.519937
Target:  5'- --cCUCGGGGCGgUGCGGGGUCaGCu -3'
miRNA:   3'- guuGAGCCUCGUgGCGUUCUAGgCGu -5'
12899 3' -55 NC_003387.1 + 22981 0.69 0.529563
Target:  5'- uCGugUCGGgcGGCGCCgacgacgGCAAGGcCCGCAu -3'
miRNA:   3'- -GUugAGCC--UCGUGG-------CGUUCUaGGCGU- -5'
12899 3' -55 NC_003387.1 + 22292 0.69 0.530637
Target:  5'- -uGC-CGGGGCcgggGCCGCGAGAgcCCGCu -3'
miRNA:   3'- guUGaGCCUCG----UGGCGUUCUa-GGCGu -5'
12899 3' -55 NC_003387.1 + 23946 0.69 0.541416
Target:  5'- uCGAC-CGGGGCACgGCGAcauGggCCGCu -3'
miRNA:   3'- -GUUGaGCCUCGUGgCGUU---CuaGGCGu -5'
12899 3' -55 NC_003387.1 + 33274 0.68 0.552267
Target:  5'- --cCUCGcGcuuGCGCUGCGcGAUCCGCAu -3'
miRNA:   3'- guuGAGC-Cu--CGUGGCGUuCUAGGCGU- -5'
12899 3' -55 NC_003387.1 + 41967 0.68 0.563183
Target:  5'- cCAGCgaGGAGCugCGCGcGGAggccgCCGCGg -3'
miRNA:   3'- -GUUGagCCUCGugGCGU-UCUa----GGCGU- -5'
12899 3' -55 NC_003387.1 + 39429 0.68 0.574156
Target:  5'- uGAC-CGG-GCGCCGCAAGcUCgGUAu -3'
miRNA:   3'- gUUGaGCCuCGUGGCGUUCuAGgCGU- -5'
12899 3' -55 NC_003387.1 + 35857 0.68 0.574156
Target:  5'- aCAGCUCGGGGCugCaugcgcugugucGCAaacgGGGUgCGCGu -3'
miRNA:   3'- -GUUGAGCCUCGugG------------CGU----UCUAgGCGU- -5'
12899 3' -55 NC_003387.1 + 9011 0.68 0.578559
Target:  5'- uCGACUCGGuGUAcgaggacaagaugauCCGCcAGGUCgCGCAg -3'
miRNA:   3'- -GUUGAGCCuCGU---------------GGCGuUCUAG-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.