miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12899 5' -58.6 NC_003387.1 + 29890 0.66 0.545719
Target:  5'- -uUGCuacGGGCCGGGCggGUGACGCUa-- -3'
miRNA:   3'- ccACG---UCCGGCUCGa-CGUUGCGGacc -5'
12899 5' -58.6 NC_003387.1 + 2572 0.66 0.545719
Target:  5'- cGUGUAcGCCGAcccGUcgGuCGACGCCUGGc -3'
miRNA:   3'- cCACGUcCGGCU---CGa-C-GUUGCGGACC- -5'
12899 5' -58.6 NC_003387.1 + 37117 0.66 0.545719
Target:  5'- cGUGCucgacgucGGCCGGGCcGUGAUGgUUGGg -3'
miRNA:   3'- cCACGu-------CCGGCUCGaCGUUGCgGACC- -5'
12899 5' -58.6 NC_003387.1 + 41957 0.66 0.535219
Target:  5'- -aUGCAGGCCgccagcgagGAGCUGC-GCGCg--- -3'
miRNA:   3'- ccACGUCCGG---------CUCGACGuUGCGgacc -5'
12899 5' -58.6 NC_003387.1 + 48168 0.66 0.535218
Target:  5'- --cGCGGGCgcAGCgGCAGCGCCa-- -3'
miRNA:   3'- ccaCGUCCGgcUCGaCGUUGCGGacc -5'
12899 5' -58.6 NC_003387.1 + 38727 0.66 0.535218
Target:  5'- aGUGCGGauugaugcGCCGGaaCUGCAGCGCCa-- -3'
miRNA:   3'- cCACGUC--------CGGCUc-GACGUUGCGGacc -5'
12899 5' -58.6 NC_003387.1 + 44822 0.66 0.535218
Target:  5'- --gGCGGGCgGGuGCUGCGcuucgGCGCCccGGc -3'
miRNA:   3'- ccaCGUCCGgCU-CGACGU-----UGCGGa-CC- -5'
12899 5' -58.6 NC_003387.1 + 11528 0.66 0.535218
Target:  5'- --aGCGccccGGCggCGAGCUGCAGCGCg-GGc -3'
miRNA:   3'- ccaCGU----CCG--GCUCGACGUUGCGgaCC- -5'
12899 5' -58.6 NC_003387.1 + 8212 0.66 0.534172
Target:  5'- cGGUcGCugcccGGCCGGGaCaGCAGCGCguacgagCUGGg -3'
miRNA:   3'- -CCA-CGu----CCGGCUC-GaCGUUGCG-------GACC- -5'
12899 5' -58.6 NC_003387.1 + 37810 0.66 0.532082
Target:  5'- cGGUcGCagcagcgcgcgaucGGGCCGAGCgaggucggGCAccccuGCGCCcGGc -3'
miRNA:   3'- -CCA-CG--------------UCCGGCUCGa-------CGU-----UGCGGaCC- -5'
12899 5' -58.6 NC_003387.1 + 43094 0.66 0.52479
Target:  5'- gGGUGaCGGGCgccggguaCGAGCgcgacggcGCGGCGCCgcggUGGu -3'
miRNA:   3'- -CCAC-GUCCG--------GCUCGa-------CGUUGCGG----ACC- -5'
12899 5' -58.6 NC_003387.1 + 45675 0.66 0.52479
Target:  5'- cGGU-CAGGgCGAGCgGCcGgGCCUGc -3'
miRNA:   3'- -CCAcGUCCgGCUCGaCGuUgCGGACc -5'
12899 5' -58.6 NC_003387.1 + 35790 0.66 0.52479
Target:  5'- -aUGCAGccCCGAGCUGUgccucGGCGCCgucGGc -3'
miRNA:   3'- ccACGUCc-GGCUCGACG-----UUGCGGa--CC- -5'
12899 5' -58.6 NC_003387.1 + 21732 0.66 0.518569
Target:  5'- cGUGCucGGCCgccgccgcggucgacGAGCUGacgcuCGACGCCUGc -3'
miRNA:   3'- cCACGu-CCGG---------------CUCGAC-----GUUGCGGACc -5'
12899 5' -58.6 NC_003387.1 + 10449 0.66 0.514439
Target:  5'- aGGuUGCGGGCC-AGCUuGCGGC-CCaGGc -3'
miRNA:   3'- -CC-ACGUCCGGcUCGA-CGUUGcGGaCC- -5'
12899 5' -58.6 NC_003387.1 + 33636 0.66 0.514439
Target:  5'- --aGCaAGGCCGAauGCcuUGUcuaucAACGCCUGGc -3'
miRNA:   3'- ccaCG-UCCGGCU--CG--ACG-----UUGCGGACC- -5'
12899 5' -58.6 NC_003387.1 + 50841 0.66 0.514439
Target:  5'- --cGCGGGUCuGGCcggGCAGCGCCa-- -3'
miRNA:   3'- ccaCGUCCGGcUCGa--CGUUGCGGacc -5'
12899 5' -58.6 NC_003387.1 + 39384 0.66 0.514439
Target:  5'- aGGUGUA---CGAGgUGCucguGCGCCUGGc -3'
miRNA:   3'- -CCACGUccgGCUCgACGu---UGCGGACC- -5'
12899 5' -58.6 NC_003387.1 + 5759 0.66 0.514439
Target:  5'- --cGCcucGGCCGAcgaGCUGau-CGCCUGGc -3'
miRNA:   3'- ccaCGu--CCGGCU---CGACguuGCGGACC- -5'
12899 5' -58.6 NC_003387.1 + 25267 0.66 0.514439
Target:  5'- -aUGCGcuGCCGcGGCgGCGGCGCCgGGg -3'
miRNA:   3'- ccACGUc-CGGC-UCGaCGUUGCGGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.