miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12901 3' -60.8 NC_003387.1 + 46955 0.66 0.371198
Target:  5'- -gGCUGcGCCgcagGUGGgGGCGCCgCAAc- -3'
miRNA:   3'- ggCGAC-UGGa---CGCCgCCGCGG-GUUaa -5'
12901 3' -60.8 NC_003387.1 + 24271 0.67 0.36275
Target:  5'- gCCGC-GAUCUGCcgccgccucGGCGuGCGCgCCGAUc -3'
miRNA:   3'- -GGCGaCUGGACG---------CCGC-CGCG-GGUUAa -5'
12901 3' -60.8 NC_003387.1 + 528 0.67 0.36275
Target:  5'- gCCGUcGGCCgccGCGGCGGCGa-CAGa- -3'
miRNA:   3'- -GGCGaCUGGa--CGCCGCCGCggGUUaa -5'
12901 3' -60.8 NC_003387.1 + 49775 0.67 0.354437
Target:  5'- gCGCguuACCUGCGGUGGCugcugGCgCAGUUc -3'
miRNA:   3'- gGCGac-UGGACGCCGCCG-----CGgGUUAA- -5'
12901 3' -60.8 NC_003387.1 + 3725 0.67 0.354437
Target:  5'- gCGCUGAucgacccguaCCUGuCGGCGuCGUCCAAg- -3'
miRNA:   3'- gGCGACU----------GGAC-GCCGCcGCGGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 7317 0.67 0.354437
Target:  5'- gCCGU--ACCUGuCGGCuGCGCUCAAg- -3'
miRNA:   3'- -GGCGacUGGAC-GCCGcCGCGGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 19547 0.67 0.353613
Target:  5'- cCCGCggUGGCCU-CGGCGcccacacugacacGCGCCCGc-- -3'
miRNA:   3'- -GGCG--ACUGGAcGCCGC-------------CGCGGGUuaa -5'
12901 3' -60.8 NC_003387.1 + 38788 0.67 0.346259
Target:  5'- aCGCUGuacaGCCU-CGGCGGCGUCa---- -3'
miRNA:   3'- gGCGAC----UGGAcGCCGCCGCGGguuaa -5'
12901 3' -60.8 NC_003387.1 + 36624 0.67 0.346259
Target:  5'- gCUGCUGGCCgccGCGaugcccgaCGGCGCCCc--- -3'
miRNA:   3'- -GGCGACUGGa--CGCc-------GCCGCGGGuuaa -5'
12901 3' -60.8 NC_003387.1 + 39852 0.67 0.346259
Target:  5'- gCCGCUGGCCUcGuuGCGcuuGCGCaCCGGUc -3'
miRNA:   3'- -GGCGACUGGA-CgcCGC---CGCG-GGUUAa -5'
12901 3' -60.8 NC_003387.1 + 38025 0.67 0.338217
Target:  5'- aCCGCaacgGAUC-GCGGCgacGGCGCCCc--- -3'
miRNA:   3'- -GGCGa---CUGGaCGCCG---CCGCGGGuuaa -5'
12901 3' -60.8 NC_003387.1 + 31222 0.67 0.329529
Target:  5'- -aGCUGAUCcugcacgacucgaUGUucucgGGCGGCGCCCAc-- -3'
miRNA:   3'- ggCGACUGG-------------ACG-----CCGCCGCGGGUuaa -5'
12901 3' -60.8 NC_003387.1 + 24889 0.67 0.322544
Target:  5'- aCGCggccuUGACCgGCGGCgugGGCGCCuCGGg- -3'
miRNA:   3'- gGCG-----ACUGGaCGCCG---CCGCGG-GUUaa -5'
12901 3' -60.8 NC_003387.1 + 17582 0.68 0.314913
Target:  5'- cCCGCUggucGACCUGCaGUGGcCGCCg---- -3'
miRNA:   3'- -GGCGA----CUGGACGcCGCC-GCGGguuaa -5'
12901 3' -60.8 NC_003387.1 + 34194 0.68 0.314157
Target:  5'- uUCGCgaacGCCUGCGugccaccGCGGCGgCCCGAg- -3'
miRNA:   3'- -GGCGac--UGGACGC-------CGCCGC-GGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 30634 0.68 0.307419
Target:  5'- gCGCguaccGGCC-GCGGCGGCgGUCCAu-- -3'
miRNA:   3'- gGCGa----CUGGaCGCCGCCG-CGGGUuaa -5'
12901 3' -60.8 NC_003387.1 + 51404 0.68 0.306677
Target:  5'- gCCGgUGACCgGCGagcgccuGCGGCGCCg---- -3'
miRNA:   3'- -GGCgACUGGaCGC-------CGCCGCGGguuaa -5'
12901 3' -60.8 NC_003387.1 + 43380 0.68 0.300063
Target:  5'- -aGCUcGCCUGCa-CGGCGCCCGGc- -3'
miRNA:   3'- ggCGAcUGGACGccGCCGCGGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 710 0.68 0.300063
Target:  5'- gUCGCUG-CC-GCGGCGGCgacgcuGCCCu--- -3'
miRNA:   3'- -GGCGACuGGaCGCCGCCG------CGGGuuaa -5'
12901 3' -60.8 NC_003387.1 + 33471 0.68 0.300063
Target:  5'- gCCGaaGucGCCgagGCGGuCGGCGCCCGc-- -3'
miRNA:   3'- -GGCgaC--UGGa--CGCC-GCCGCGGGUuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.