miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12903 5' -56.3 NC_003387.1 + 30564 0.67 0.565961
Target:  5'- cGCCGCGgccgguaCGCGCCGugccgcgagugcGGGUACGUCGGc -3'
miRNA:   3'- -UGGUGUaa-----GUGUGGU------------CCCGUGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 44721 0.67 0.565961
Target:  5'- gGCCAgGaUCGCcgaggccgcgGCCAGGGCcacacgcucGCGCCAc -3'
miRNA:   3'- -UGGUgUaAGUG----------UGGUCCCG---------UGCGGUc -5'
12903 5' -56.3 NC_003387.1 + 32558 0.67 0.555084
Target:  5'- cACCACG---GCGCCGGGGUcgacgcaaACGCCc- -3'
miRNA:   3'- -UGGUGUaagUGUGGUCCCG--------UGCGGuc -5'
12903 5' -56.3 NC_003387.1 + 21770 0.67 0.554
Target:  5'- gGCCGCGcUCGCcgaggcgGCCAGGGCGuCGgCGa -3'
miRNA:   3'- -UGGUGUaAGUG-------UGGUCCCGU-GCgGUc -5'
12903 5' -56.3 NC_003387.1 + 45730 0.67 0.548588
Target:  5'- cGCgACAUUCugcgGCGCCugcacaagugguccgAGGGCGCGCUg- -3'
miRNA:   3'- -UGgUGUAAG----UGUGG---------------UCCCGUGCGGuc -5'
12903 5' -56.3 NC_003387.1 + 17046 0.67 0.54427
Target:  5'- cCCGCc--CGCGCCAGGugaaACGCCAGc -3'
miRNA:   3'- uGGUGuaaGUGUGGUCCcg--UGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 10036 0.67 0.543192
Target:  5'- aGCCGaag-CGCGCCgAGGGCGCggugucgGCCGGu -3'
miRNA:   3'- -UGGUguaaGUGUGG-UCCCGUG-------CGGUC- -5'
12903 5' -56.3 NC_003387.1 + 39474 0.68 0.512271
Target:  5'- cCCACucgCGCGCCAGGcGCACGagCAc -3'
miRNA:   3'- uGGUGuaaGUGUGGUCC-CGUGCg-GUc -5'
12903 5' -56.3 NC_003387.1 + 19661 0.68 0.512271
Target:  5'- uGCCACAcgUCgACGCCGagcaGGCuCGCCAGc -3'
miRNA:   3'- -UGGUGUa-AG-UGUGGUc---CCGuGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 47111 0.68 0.512271
Target:  5'- cGCCACGccUCAUGCCcggccGGGC-CGCCAa -3'
miRNA:   3'- -UGGUGUa-AGUGUGGu----CCCGuGCGGUc -5'
12903 5' -56.3 NC_003387.1 + 22569 0.68 0.511217
Target:  5'- gAUC-CAUUCGCGCCAguuggccGGGUcgucggggucgGCGCCGGg -3'
miRNA:   3'- -UGGuGUAAGUGUGGU-------CCCG-----------UGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 17263 0.68 0.501775
Target:  5'- gGCCACuUUCGCGCCgucgccgcccaGGcGGCGCaCCAGc -3'
miRNA:   3'- -UGGUGuAAGUGUGG-----------UC-CCGUGcGGUC- -5'
12903 5' -56.3 NC_003387.1 + 37919 0.68 0.501775
Target:  5'- uGCC-CGguggcUCgGCACCGccGGGCACGCCAa -3'
miRNA:   3'- -UGGuGUa----AG-UGUGGU--CCCGUGCGGUc -5'
12903 5' -56.3 NC_003387.1 + 16415 0.68 0.481075
Target:  5'- cAUCGCGUUCACAgauCCGuuGCGCGCCAu -3'
miRNA:   3'- -UGGUGUAAGUGU---GGUccCGUGCGGUc -5'
12903 5' -56.3 NC_003387.1 + 12953 0.68 0.481075
Target:  5'- cGCuCACGUUgACGCCAGacggcaaagacaGGCcCGCCGGu -3'
miRNA:   3'- -UG-GUGUAAgUGUGGUC------------CCGuGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 8438 0.68 0.481075
Target:  5'- cACCGCGgccugCAUGCCgaacAGcGGCACGUCGGg -3'
miRNA:   3'- -UGGUGUaa---GUGUGG----UC-CCGUGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 7905 0.68 0.469868
Target:  5'- uCCGCcugCGCGCC-GGGCAccucggcCGCCAGg -3'
miRNA:   3'- uGGUGuaaGUGUGGuCCCGU-------GCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 24155 0.69 0.460799
Target:  5'- cACCGCAcagcgUCACAguuCCGuuGCGCGCCAGg -3'
miRNA:   3'- -UGGUGUa----AGUGU---GGUccCGUGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 629 0.69 0.460799
Target:  5'- aGCCGC---CGCGUCAGGGCA-GCCAGa -3'
miRNA:   3'- -UGGUGuaaGUGUGGUCCCGUgCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 22143 0.69 0.450832
Target:  5'- gGCgACGUUCACuggCGGcGGCACGCuCAGc -3'
miRNA:   3'- -UGgUGUAAGUGug-GUC-CCGUGCG-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.