miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12904 3' -57.2 NC_003387.1 + 30763 0.66 0.611807
Target:  5'- --cGuGUCGGGCGUgaCCGUGuacugcuCGCGGUc -3'
miRNA:   3'- gaaCuCAGCCCGUA--GGCGCu------GCGCUA- -5'
12904 3' -57.2 NC_003387.1 + 6568 0.66 0.6009
Target:  5'- --cGAGgucgCGaaCAUUCGCGACGCGAa -3'
miRNA:   3'- gaaCUCa---GCccGUAGGCGCUGCGCUa -5'
12904 3' -57.2 NC_003387.1 + 45624 0.66 0.579173
Target:  5'- --gGAGUCGGcGUA-CgGCGAgGCGAa -3'
miRNA:   3'- gaaCUCAGCC-CGUaGgCGCUgCGCUa -5'
12904 3' -57.2 NC_003387.1 + 21269 0.66 0.56837
Target:  5'- --gGAGUCGGGCAag-GUGGCGCa-- -3'
miRNA:   3'- gaaCUCAGCCCGUaggCGCUGCGcua -5'
12904 3' -57.2 NC_003387.1 + 8144 0.66 0.56837
Target:  5'- ---cGGcCGGGCAgcgaCCGCGACGUGu- -3'
miRNA:   3'- gaacUCaGCCCGUa---GGCGCUGCGCua -5'
12904 3' -57.2 NC_003387.1 + 23750 0.67 0.536299
Target:  5'- ---cGGUCGGGCGUcCCGCaGGCGUa-- -3'
miRNA:   3'- gaacUCAGCCCGUA-GGCG-CUGCGcua -5'
12904 3' -57.2 NC_003387.1 + 3964 0.67 0.525745
Target:  5'- --aGGGUCGGGCA---GCGGCGcCGGUu -3'
miRNA:   3'- gaaCUCAGCCCGUaggCGCUGC-GCUA- -5'
12904 3' -57.2 NC_003387.1 + 32934 0.7 0.35398
Target:  5'- ---cAGUCGGcGCAgUCgGCGACGCGGa -3'
miRNA:   3'- gaacUCAGCC-CGU-AGgCGCUGCGCUa -5'
12904 3' -57.2 NC_003387.1 + 20970 0.7 0.35398
Target:  5'- --aGGGgCGGGCAacgCCGCGAaugcCGCGAUa -3'
miRNA:   3'- gaaCUCaGCCCGUa--GGCGCU----GCGCUA- -5'
12904 3' -57.2 NC_003387.1 + 34271 0.71 0.313803
Target:  5'- --cGAGUCGGGCGUCacgguGCG-CGCGu- -3'
miRNA:   3'- gaaCUCAGCCCGUAGg----CGCuGCGCua -5'
12904 3' -57.2 NC_003387.1 + 13452 0.73 0.219957
Target:  5'- cCUgcuGUCGGGCAagggCCGCGACgGCGAg -3'
miRNA:   3'- -GAacuCAGCCCGUa---GGCGCUG-CGCUa -5'
12904 3' -57.2 NC_003387.1 + 46928 0.74 0.187658
Target:  5'- gCUUGAGcCGGGCAccgaggugucgaUCCGCGgcgaGCGCGGc -3'
miRNA:   3'- -GAACUCaGCCCGU------------AGGCGC----UGCGCUa -5'
12904 3' -57.2 NC_003387.1 + 18506 0.8 0.079385
Target:  5'- gCUUGAGcCGGGCAccgaCCGCGACGUGGc -3'
miRNA:   3'- -GAACUCaGCCCGUa---GGCGCUGCGCUa -5'
12904 3' -57.2 NC_003387.1 + 10221 1.06 0.000987
Target:  5'- gCUUGAGUCGGGCAUCCGCGACGCGAUg -3'
miRNA:   3'- -GAACUCAGCCCGUAGGCGCUGCGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.