Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 12904 | 5' | -62.1 | NC_003387.1 | + | 4510 | 0.66 | 0.379457 |
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Target: 5'- -cGGCGCGGGCUCGGcGaaCGCCuuGc -3' miRNA: 3'- gcUCGCGCCCGAGUU-CcaGCGGggCu -5' |
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| 12904 | 5' | -62.1 | NC_003387.1 | + | 40086 | 0.66 | 0.379457 |
|
Target: 5'- gCGAGCGCccgcgGGGCUCuAGGU-GCCgUCGu -3' miRNA: 3'- -GCUCGCG-----CCCGAGuUCCAgCGG-GGCu -5' |
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| 12904 | 5' | -62.1 | NC_003387.1 | + | 50279 | 0.66 | 0.379457 |
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Target: 5'- uGAcGCGCGGGUcgUCGuuGcCGUCCCGGu -3' miRNA: 3'- gCU-CGCGCCCG--AGUucCaGCGGGGCU- -5' |
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| 12904 | 5' | -62.1 | NC_003387.1 | + | 51609 | 0.66 | 0.379457 |
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Target: 5'- gCGGGCGCagGGGCa-AGGGUgGCCgUCGAc -3' miRNA: 3'- -GCUCGCG--CCCGagUUCCAgCGG-GGCU- -5' |
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| 12904 | 5' | -62.1 | NC_003387.1 | + | 13859 | 0.66 | 0.362791 |
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Target: 5'- gCGAGCGCaGcGCgaccGGGUCcauaccgaccgGCCCCGAa -3' miRNA: 3'- -GCUCGCGcC-CGagu-UCCAG-----------CGGGGCU- -5' |
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| 12904 | 5' | -62.1 | NC_003387.1 | + | 44858 | 0.66 | 0.361971 |
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Target: 5'- --cGCGCGGGCcagcuugUCGAGGUCGggCCGc -3' miRNA: 3'- gcuCGCGCCCG-------AGUUCCAGCggGGCu -5' |
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| 12904 | 5' | -62.1 | NC_003387.1 | + | 49451 | 0.66 | 0.346639 |
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Target: 5'- gCGcAGUGUGGuGCUCAAGGaugCGCaCCaCGGu -3' miRNA: 3'- -GC-UCGCGCC-CGAGUUCCa--GCG-GG-GCU- -5' |
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| 12904 | 5' | -62.1 | NC_003387.1 | + | 178 | 0.66 | 0.396629 |
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Target: 5'- gCGGGCGCGcaucaGCUCGGGGUCcaugugucuGCCUCc- -3' miRNA: 3'- -GCUCGCGCc----CGAGUUCCAG---------CGGGGcu -5' |
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| 12904 | 5' | -62.1 | NC_003387.1 | + | 30223 | 0.66 | 0.387981 |
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Target: 5'- uCGAGCGCGccGC-CGAGGccgUCGCCCgGu -3' miRNA: 3'- -GCUCGCGCc-CGaGUUCC---AGCGGGgCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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