Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12904 | 5' | -62.1 | NC_003387.1 | + | 51417 | 0.67 | 0.308549 |
Target: 5'- uCGGcGCucaGCGGG-UCGGGGUCGCgCUCGAa -3' miRNA: 3'- -GCU-CG---CGCCCgAGUUCCAGCG-GGGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 42412 | 0.67 | 0.30782 |
Target: 5'- gGAGCaguucgaGCaGGCccgCAAGGUCGUCaCCGAg -3' miRNA: 3'- gCUCG-------CGcCCGa--GUUCCAGCGG-GGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 47474 | 0.68 | 0.294232 |
Target: 5'- gGGGCG-GGGCc---GGUUGCCCCGc -3' miRNA: 3'- gCUCGCgCCCGaguuCCAGCGGGGCu -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 47397 | 0.68 | 0.28727 |
Target: 5'- -aAGCGCGGGg-CAAccGGcccCGCCCCGAg -3' miRNA: 3'- gcUCGCGCCCgaGUU--CCa--GCGGGGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 43921 | 0.68 | 0.280438 |
Target: 5'- uCGGGCGCGaGCUgAgcgggaaucAGGUCGCCCg-- -3' miRNA: 3'- -GCUCGCGCcCGAgU---------UCCAGCGGGgcu -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 41390 | 0.68 | 0.280438 |
Target: 5'- cCGAGCGcCGGGCgacCGAGG-CGCagcaCGAg -3' miRNA: 3'- -GCUCGC-GCCCGa--GUUCCaGCGgg--GCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 36503 | 0.68 | 0.280438 |
Target: 5'- aCGAGCGCGGcauauggcaGCgCAGGcugaGCCCCGAc -3' miRNA: 3'- -GCUCGCGCC---------CGaGUUCcag-CGGGGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 29464 | 0.68 | 0.273736 |
Target: 5'- ----gGCGGGCgagaUCGAGGUCGUCaCCGGc -3' miRNA: 3'- gcucgCGCCCG----AGUUCCAGCGG-GGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 31837 | 0.68 | 0.273736 |
Target: 5'- -cGGUGCGGGCUCGgcgaccAGGUCGagcagggacaCCCCu- -3' miRNA: 3'- gcUCGCGCCCGAGU------UCCAGC----------GGGGcu -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 6849 | 0.69 | 0.236202 |
Target: 5'- uGAGCGCGaccGCUCAGGG-CGCCaacaagacgCCGGu -3' miRNA: 3'- gCUCGCGCc--CGAGUUCCaGCGG---------GGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 7959 | 0.69 | 0.236202 |
Target: 5'- aCGAGUGCGGccgacCUCAAGGUCgGUgCCGu -3' miRNA: 3'- -GCUCGCGCCc----GAGUUCCAG-CGgGGCu -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 6792 | 0.69 | 0.226949 |
Target: 5'- cCGAGCGCGacauggucgcccugcGGCUCAAGGcgcgguUCGCCUa-- -3' miRNA: 3'- -GCUCGCGC---------------CCGAGUUCC------AGCGGGgcu -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 46998 | 0.7 | 0.221323 |
Target: 5'- aCGAGCGCGGGCcgCcuGGUgcucgacuucauuggCGgCCCGGc -3' miRNA: 3'- -GCUCGCGCCCGa-GuuCCA---------------GCgGGGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 41537 | 0.7 | 0.197462 |
Target: 5'- gGGGCGgGGGCagucagggcggcgUCAGGGcCGCgCCGGu -3' miRNA: 3'- gCUCGCgCCCG-------------AGUUCCaGCGgGGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 40859 | 0.71 | 0.178628 |
Target: 5'- gCGAGCGCGGGaucuuggUCGAGG-CGCaCCuCGGu -3' miRNA: 3'- -GCUCGCGCCCg------AGUUCCaGCG-GG-GCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 28016 | 0.71 | 0.174063 |
Target: 5'- aCGAGC-CGGaaccGCUCGGGGUCGCggCCGAc -3' miRNA: 3'- -GCUCGcGCC----CGAGUUCCAGCGg-GGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 26212 | 0.71 | 0.165243 |
Target: 5'- aCGAcGUGCGGcGCuUCAuucacAGcGUCGCCCCGGc -3' miRNA: 3'- -GCU-CGCGCC-CG-AGU-----UC-CAGCGGGGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 18559 | 0.71 | 0.165243 |
Target: 5'- uCGAGCGCaaGGC-CGAGGgcgaCGCCCUGGu -3' miRNA: 3'- -GCUCGCGc-CCGaGUUCCa---GCGGGGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 19610 | 0.71 | 0.160985 |
Target: 5'- aCGAGCGCGaucGGCagCAGcGaGUUGCCCCGGu -3' miRNA: 3'- -GCUCGCGC---CCGa-GUU-C-CAGCGGGGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 50541 | 0.72 | 0.152765 |
Target: 5'- aCGAccuCGCGGGC-CGGGGUCGgCUCGAc -3' miRNA: 3'- -GCUc--GCGCCCGaGUUCCAGCgGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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