Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12904 | 5' | -62.1 | NC_003387.1 | + | 47397 | 0.68 | 0.28727 |
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Target: 5'- -aAGCGCGGGg-CAAccGGcccCGCCCCGAg -3' miRNA: 3'- gcUCGCGCCCgaGUU--CCa--GCGGGGCU- -5' |
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| 12904 | 5' | -62.1 | NC_003387.1 | + | 47474 | 0.68 | 0.294232 |
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Target: 5'- gGGGCG-GGGCc---GGUUGCCCCGc -3' miRNA: 3'- gCUCGCgCCCGaguuCCAGCGGGGCu -5' |
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| 12904 | 5' | -62.1 | NC_003387.1 | + | 49451 | 0.66 | 0.346639 |
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Target: 5'- gCGcAGUGUGGuGCUCAAGGaugCGCaCCaCGGu -3' miRNA: 3'- -GC-UCGCGCC-CGAGUUCCa--GCG-GG-GCU- -5' |
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| 12904 | 5' | -62.1 | NC_003387.1 | + | 50279 | 0.66 | 0.379457 |
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Target: 5'- uGAcGCGCGGGUcgUCGuuGcCGUCCCGGu -3' miRNA: 3'- gCU-CGCGCCCG--AGUucCaGCGGGGCU- -5' |
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| 12904 | 5' | -62.1 | NC_003387.1 | + | 50541 | 0.72 | 0.152765 |
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Target: 5'- aCGAccuCGCGGGC-CGGGGUCGgCUCGAc -3' miRNA: 3'- -GCUc--GCGCCCGaGUUCCAGCgGGGCU- -5' |
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| 12904 | 5' | -62.1 | NC_003387.1 | + | 50609 | 0.79 | 0.048702 |
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Target: 5'- cCGAGCcaccGCGGGCUCAGGGgUGCCUCGu -3' miRNA: 3'- -GCUCG----CGCCCGAGUUCCaGCGGGGCu -5' |
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| 12904 | 5' | -62.1 | NC_003387.1 | + | 51363 | 0.72 | 0.137095 |
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Target: 5'- aCGAGCugGCaGGGCUCGGGGUCGUCguccucgUCGAg -3' miRNA: 3'- -GCUCG--CG-CCCGAGUUCCAGCGG-------GGCU- -5' |
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| 12904 | 5' | -62.1 | NC_003387.1 | + | 51417 | 0.67 | 0.308549 |
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Target: 5'- uCGGcGCucaGCGGG-UCGGGGUCGCgCUCGAa -3' miRNA: 3'- -GCU-CG---CGCCCgAGUUCCAGCG-GGGCU- -5' |
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| 12904 | 5' | -62.1 | NC_003387.1 | + | 51609 | 0.66 | 0.379457 |
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Target: 5'- gCGGGCGCagGGGCa-AGGGUgGCCgUCGAc -3' miRNA: 3'- -GCUCGCG--CCCGagUUCCAgCGG-GGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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