miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12904 5' -62.1 NC_003387.1 + 10256 1.08 0.000253
Target:  5'- cCGAGCGCGGGCUCAAGGUCGCCCCGAa -3'
miRNA:   3'- -GCUCGCGCCCGAGUUCCAGCGGGGCU- -5'
12904 5' -62.1 NC_003387.1 + 32043 0.66 0.35465
Target:  5'- cCGAGU-CGGGUcgCAAGucuGUCGCCgCCGAg -3'
miRNA:   3'- -GCUCGcGCCCGa-GUUC---CAGCGG-GGCU- -5'
12904 5' -62.1 NC_003387.1 + 16982 0.66 0.362791
Target:  5'- -uGGCGCGGGC---GGGcugcgucaUCGaCCCCGAg -3'
miRNA:   3'- gcUCGCGCCCGaguUCC--------AGC-GGGGCU- -5'
12904 5' -62.1 NC_003387.1 + 30223 0.66 0.387981
Target:  5'- uCGAGCGCGccGC-CGAGGccgUCGCCCgGu -3'
miRNA:   3'- -GCUCGCGCc-CGaGUUCC---AGCGGGgCu -5'
12904 5' -62.1 NC_003387.1 + 26212 0.71 0.165243
Target:  5'- aCGAcGUGCGGcGCuUCAuucacAGcGUCGCCCCGGc -3'
miRNA:   3'- -GCU-CGCGCC-CG-AGU-----UC-CAGCGGGGCU- -5'
12904 5' -62.1 NC_003387.1 + 46998 0.7 0.221323
Target:  5'- aCGAGCGCGGGCcgCcuGGUgcucgacuucauuggCGgCCCGGc -3'
miRNA:   3'- -GCUCGCGCCCGa-GuuCCA---------------GCgGGGCU- -5'
12904 5' -62.1 NC_003387.1 + 6849 0.69 0.236202
Target:  5'- uGAGCGCGaccGCUCAGGG-CGCCaacaagacgCCGGu -3'
miRNA:   3'- gCUCGCGCc--CGAGUUCCaGCGG---------GGCU- -5'
12904 5' -62.1 NC_003387.1 + 36503 0.68 0.280438
Target:  5'- aCGAGCGCGGcauauggcaGCgCAGGcugaGCCCCGAc -3'
miRNA:   3'- -GCUCGCGCC---------CGaGUUCcag-CGGGGCU- -5'
12904 5' -62.1 NC_003387.1 + 47397 0.68 0.28727
Target:  5'- -aAGCGCGGGg-CAAccGGcccCGCCCCGAg -3'
miRNA:   3'- gcUCGCGCCCgaGUU--CCa--GCGGGGCU- -5'
12904 5' -62.1 NC_003387.1 + 17706 0.67 0.315904
Target:  5'- aCGGGCaGCaaGUUCGAGGcggugCGCCCCGGc -3'
miRNA:   3'- -GCUCG-CGccCGAGUUCCa----GCGGGGCU- -5'
12904 5' -62.1 NC_003387.1 + 43921 0.68 0.280438
Target:  5'- uCGGGCGCGaGCUgAgcgggaaucAGGUCGCCCg-- -3'
miRNA:   3'- -GCUCGCGCcCGAgU---------UCCAGCGGGgcu -5'
12904 5' -62.1 NC_003387.1 + 1111 0.75 0.091584
Target:  5'- gCGAGCGCGGGUUCGgccguGGGUucgccggugucgaCGUCCUGAu -3'
miRNA:   3'- -GCUCGCGCCCGAGU-----UCCA-------------GCGGGGCU- -5'
12904 5' -62.1 NC_003387.1 + 21227 0.66 0.35465
Target:  5'- gCGGGCGCaGGGCgauccggucggCAuGGUgCGCCgCGAc -3'
miRNA:   3'- -GCUCGCG-CCCGa----------GUuCCA-GCGGgGCU- -5'
12904 5' -62.1 NC_003387.1 + 36116 0.74 0.114025
Target:  5'- cCGAGuCGaCGcGGUUCGAGGUCgucgagugaGCCCCGAc -3'
miRNA:   3'- -GCUC-GC-GC-CCGAGUUCCAG---------CGGGGCU- -5'
12904 5' -62.1 NC_003387.1 + 41390 0.68 0.280438
Target:  5'- cCGAGCGcCGGGCgacCGAGG-CGCagcaCGAg -3'
miRNA:   3'- -GCUCGC-GCCCGa--GUUCCaGCGgg--GCU- -5'
12904 5' -62.1 NC_003387.1 + 45143 0.66 0.35465
Target:  5'- uCGAgGCGCGGcGCUCgGAGGUgGUCgCGu -3'
miRNA:   3'- -GCU-CGCGCC-CGAG-UUCCAgCGGgGCu -5'
12904 5' -62.1 NC_003387.1 + 7808 0.66 0.37106
Target:  5'- cCGAGCuGCaacgccuGGCggcCGAGGUCGCCCgGc -3'
miRNA:   3'- -GCUCG-CGc------CCGa--GUUCCAGCGGGgCu -5'
12904 5' -62.1 NC_003387.1 + 18559 0.71 0.165243
Target:  5'- uCGAGCGCaaGGC-CGAGGgcgaCGCCCUGGu -3'
miRNA:   3'- -GCUCGCGc-CCGaGUUCCa---GCGGGGCU- -5'
12904 5' -62.1 NC_003387.1 + 6792 0.69 0.226949
Target:  5'- cCGAGCGCGacauggucgcccugcGGCUCAAGGcgcgguUCGCCUa-- -3'
miRNA:   3'- -GCUCGCGC---------------CCGAGUUCC------AGCGGGgcu -5'
12904 5' -62.1 NC_003387.1 + 42412 0.67 0.30782
Target:  5'- gGAGCaguucgaGCaGGCccgCAAGGUCGUCaCCGAg -3'
miRNA:   3'- gCUCG-------CGcCCGa--GUUCCAGCGG-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.