Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12904 | 5' | -62.1 | NC_003387.1 | + | 34226 | 0.73 | 0.130346 |
Target: 5'- -aGGUGCGGGUcgacccaggcgUCAGGGUCGCCCg-- -3' miRNA: 3'- gcUCGCGCCCG-----------AGUUCCAGCGGGgcu -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 37985 | 0.75 | 0.084619 |
Target: 5'- cCGAGCcacGCGGGCagcGGGUCGCCCuCGGg -3' miRNA: 3'- -GCUCG---CGCCCGaguUCCAGCGGG-GCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 50609 | 0.79 | 0.048702 |
Target: 5'- cCGAGCcaccGCGGGCUCAGGGgUGCCUCGu -3' miRNA: 3'- -GCUCG----CGCCCGAGUUCCaGCGGGGCu -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 13859 | 0.66 | 0.362791 |
Target: 5'- gCGAGCGCaGcGCgaccGGGUCcauaccgaccgGCCCCGAa -3' miRNA: 3'- -GCUCGCGcC-CGagu-UCCAG-----------CGGGGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 51363 | 0.72 | 0.137095 |
Target: 5'- aCGAGCugGCaGGGCUCGGGGUCGUCguccucgUCGAg -3' miRNA: 3'- -GCUCG--CG-CCCGAGUUCCAGCGG-------GGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 4554 | 0.72 | 0.148799 |
Target: 5'- gCGGGCucggccuucgcgGCGGGCUCGGcGGUCGgCUCGGc -3' miRNA: 3'- -GCUCG------------CGCCCGAGUU-CCAGCgGGGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 51609 | 0.66 | 0.379457 |
Target: 5'- gCGGGCGCagGGGCa-AGGGUgGCCgUCGAc -3' miRNA: 3'- -GCUCGCG--CCCGagUUCCAgCGG-GGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 18932 | 0.66 | 0.362791 |
Target: 5'- aCGAGCGCcucGGGCgacgacAGGUCGaugCCCGu -3' miRNA: 3'- -GCUCGCG---CCCGagu---UCCAGCg--GGGCu -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 8181 | 0.67 | 0.338758 |
Target: 5'- aCGAGC-UGGGCUCGcccucgggcGGGUUGgCgCCGAc -3' miRNA: 3'- -GCUCGcGCCCGAGU---------UCCAGCgG-GGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 8471 | 0.67 | 0.338758 |
Target: 5'- aCGGcGgGCGGGCUUGAGGccgaUCGUCCaGAa -3' miRNA: 3'- -GCU-CgCGCCCGAGUUCC----AGCGGGgCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 37922 | 0.67 | 0.313683 |
Target: 5'- gCGAGcCGcCGGGCgCAGGGgugcccgaccucgcUCGgCCCGAu -3' miRNA: 3'- -GCUC-GC-GCCCGaGUUCC--------------AGCgGGGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 8612 | 0.67 | 0.312946 |
Target: 5'- --cGCGCGGGCaacuaacuacccgCGAgccGGUCGgCCCGAg -3' miRNA: 3'- gcuCGCGCCCGa------------GUU---CCAGCgGGGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 51417 | 0.67 | 0.308549 |
Target: 5'- uCGGcGCucaGCGGG-UCGGGGUCGCgCUCGAa -3' miRNA: 3'- -GCU-CG---CGCCCgAGUUCCAGCG-GGGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 47474 | 0.68 | 0.294232 |
Target: 5'- gGGGCG-GGGCc---GGUUGCCCCGc -3' miRNA: 3'- gCUCGCgCCCGaguuCCAGCGGGGCu -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 41537 | 0.7 | 0.197462 |
Target: 5'- gGGGCGgGGGCagucagggcggcgUCAGGGcCGCgCCGGu -3' miRNA: 3'- gCUCGCgCCCG-------------AGUUCCaGCGgGGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 40859 | 0.71 | 0.178628 |
Target: 5'- gCGAGCGCGGGaucuuggUCGAGG-CGCaCCuCGGu -3' miRNA: 3'- -GCUCGCGCCCg------AGUUCCaGCG-GG-GCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 28016 | 0.71 | 0.174063 |
Target: 5'- aCGAGC-CGGaaccGCUCGGGGUCGCggCCGAc -3' miRNA: 3'- -GCUCGcGCC----CGAGUUCCAGCGg-GGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 19610 | 0.71 | 0.160985 |
Target: 5'- aCGAGCGCGaucGGCagCAGcGaGUUGCCCCGGu -3' miRNA: 3'- -GCUCGCGC---CCGa-GUU-C-CAGCGGGGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 50541 | 0.72 | 0.152765 |
Target: 5'- aCGAccuCGCGGGC-CGGGGUCGgCUCGAc -3' miRNA: 3'- -GCUc--GCGCCCGaGUUCCAGCgGGGCU- -5' |
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12904 | 5' | -62.1 | NC_003387.1 | + | 30236 | 0.72 | 0.152765 |
Target: 5'- gCGAucGCGCGGGCcuggUCgAGGGUgGCCUCGGu -3' miRNA: 3'- -GCU--CGCGCCCG----AG-UUCCAgCGGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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