miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12908 5' -53.8 NC_003387.1 + 51182 0.66 0.808269
Target:  5'- cCGGgcGCGUgugggcaGCCUCGcGCGGGUUGc -3'
miRNA:   3'- aGCUuuCGUAac-----CGGAGC-UGCCCAGC- -5'
12908 5' -53.8 NC_003387.1 + 46438 0.66 0.79863
Target:  5'- cCGugucGCGcUUGGCCUCGgccGCGGG-CGa -3'
miRNA:   3'- aGCuuu-CGU-AACCGGAGC---UGCCCaGC- -5'
12908 5' -53.8 NC_003387.1 + 51322 0.66 0.79863
Target:  5'- gUCGAGGGCcagGGCgUCGACG--UCGa -3'
miRNA:   3'- -AGCUUUCGuaaCCGgAGCUGCccAGC- -5'
12908 5' -53.8 NC_003387.1 + 39624 0.66 0.79863
Target:  5'- cCGAGguGGCGgcaUGaGCCUCGAccCGGuGUCGc -3'
miRNA:   3'- aGCUU--UCGUa--AC-CGGAGCU--GCC-CAGC- -5'
12908 5' -53.8 NC_003387.1 + 37400 0.66 0.788815
Target:  5'- gCGggGGCucguccacGGCacgUCGGCGcGGUCGa -3'
miRNA:   3'- aGCuuUCGuaa-----CCGg--AGCUGC-CCAGC- -5'
12908 5' -53.8 NC_003387.1 + 24877 0.66 0.778834
Target:  5'- cCGgcGGCGUggGcGCCUCGGgGGGggcUCGg -3'
miRNA:   3'- aGCuuUCGUAa-C-CGGAGCUgCCC---AGC- -5'
12908 5' -53.8 NC_003387.1 + 32733 0.66 0.778834
Target:  5'- aCGGc-GCggUGGCCUCGGCGauUCGg -3'
miRNA:   3'- aGCUuuCGuaACCGGAGCUGCccAGC- -5'
12908 5' -53.8 NC_003387.1 + 45073 0.66 0.778834
Target:  5'- gUCGAGGGCcguccugGGCCgguguUCGGCGgccaGGUCGu -3'
miRNA:   3'- -AGCUUUCGuaa----CCGG-----AGCUGC----CCAGC- -5'
12908 5' -53.8 NC_003387.1 + 38771 0.66 0.776819
Target:  5'- gCGAGGGCGgcaaucacacgcUGuacaGCCUCGGCGGcGUCa -3'
miRNA:   3'- aGCUUUCGUa-----------AC----CGGAGCUGCC-CAGc -5'
12908 5' -53.8 NC_003387.1 + 48077 0.66 0.768699
Target:  5'- cCG-AAGC----GCCUCGACGGGUgGc -3'
miRNA:   3'- aGCuUUCGuaacCGGAGCUGCCCAgC- -5'
12908 5' -53.8 NC_003387.1 + 30303 0.67 0.758421
Target:  5'- cCG--GGCGacGGCCUCGGCGGcgcgcucgacGUCGg -3'
miRNA:   3'- aGCuuUCGUaaCCGGAGCUGCC----------CAGC- -5'
12908 5' -53.8 NC_003387.1 + 34413 0.67 0.758421
Target:  5'- gUCGAc-GUcgAUcGGCUgCGACGGGUCGg -3'
miRNA:   3'- -AGCUuuCG--UAaCCGGaGCUGCCCAGC- -5'
12908 5' -53.8 NC_003387.1 + 51713 0.67 0.748012
Target:  5'- aUUGccAGUGUcagGGCCUCGACGgcGGUCa -3'
miRNA:   3'- -AGCuuUCGUAa--CCGGAGCUGC--CCAGc -5'
12908 5' -53.8 NC_003387.1 + 30219 0.67 0.737484
Target:  5'- gUCGAGGGU---GGCCUCGguGCGgccacGGUCGa -3'
miRNA:   3'- -AGCUUUCGuaaCCGGAGC--UGC-----CCAGC- -5'
12908 5' -53.8 NC_003387.1 + 14687 0.67 0.733242
Target:  5'- gUGGGAGUcgUGGCCgaaguuccuggugCG-CGGGUCu -3'
miRNA:   3'- aGCUUUCGuaACCGGa------------GCuGCCCAGc -5'
12908 5' -53.8 NC_003387.1 + 40242 0.67 0.717193
Target:  5'- gCGAGGGCucgacgacgaucgGGCCgcCGACGGuGUCGc -3'
miRNA:   3'- aGCUUUCGuaa----------CCGGa-GCUGCC-CAGC- -5'
12908 5' -53.8 NC_003387.1 + 6503 0.67 0.716115
Target:  5'- gCGAAGGCAguuGCgUCGGcCGGGUgGg -3'
miRNA:   3'- aGCUUUCGUaacCGgAGCU-GCCCAgC- -5'
12908 5' -53.8 NC_003387.1 + 22611 0.67 0.716115
Target:  5'- gUCGAGccAGCccucGGCCUgGGCcaGGGUCGc -3'
miRNA:   3'- -AGCUU--UCGuaa-CCGGAgCUG--CCCAGC- -5'
12908 5' -53.8 NC_003387.1 + 18994 0.67 0.715038
Target:  5'- aCGAGcuggcGGCGUgGGCCUCGACGaaccuguucggauGGaUCGa -3'
miRNA:   3'- aGCUU-----UCGUAaCCGGAGCUGC-------------CC-AGC- -5'
12908 5' -53.8 NC_003387.1 + 28212 0.68 0.704213
Target:  5'- cUCGAucgugGGGCGcuugcgGGCCUCGGCGaucagcgccucaaGGUCGu -3'
miRNA:   3'- -AGCU-----UUCGUaa----CCGGAGCUGC-------------CCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.