miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 2624 0.66 0.74976
Target:  5'- gGCgaGGAUcugCCGCGGCGAccgcguGCGGAACaCCg -3'
miRNA:   3'- gCG--UCUA---GGUGUCGCU------CGUCUUGcGG- -5'
12910 5' -54.8 NC_003387.1 + 1710 0.66 0.74976
Target:  5'- --uGGAUCgCugAGCGGGCcGGGCGgCg -3'
miRNA:   3'- gcgUCUAG-GugUCGCUCGuCUUGCgG- -5'
12910 5' -54.8 NC_003387.1 + 39214 0.66 0.74976
Target:  5'- cCGCGG-UCgGgCAGUggGAGCGGGuaccgGCGCCg -3'
miRNA:   3'- -GCGUCuAGgU-GUCG--CUCGUCU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 29415 0.66 0.74976
Target:  5'- gCGCAGGaggaggccgCCGCAGCGGcccgcGCGGu-CGCUa -3'
miRNA:   3'- -GCGUCUa--------GGUGUCGCU-----CGUCuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 52082 0.66 0.74976
Target:  5'- uCGUcgAGggCCgACAGguCGGGCAGGuGCGCCa -3'
miRNA:   3'- -GCG--UCuaGG-UGUC--GCUCGUCU-UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 27669 0.66 0.739258
Target:  5'- gGCAGuAUCuCGCAGCucuGGCGcGAgugcuGCGCCg -3'
miRNA:   3'- gCGUC-UAG-GUGUCGc--UCGU-CU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 12474 0.66 0.739258
Target:  5'- cCGCGGG-CCugGcgucCGAGCAGAACcuacaGCCc -3'
miRNA:   3'- -GCGUCUaGGugUc---GCUCGUCUUG-----CGG- -5'
12910 5' -54.8 NC_003387.1 + 29293 0.66 0.739258
Target:  5'- aCGCccuGuUCCcCGGCGAccgcggGCAcGAGCGCCa -3'
miRNA:   3'- -GCGu--CuAGGuGUCGCU------CGU-CUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 13546 0.66 0.739258
Target:  5'- uCGCuguucaAGggCCugGGCagcccgaucgacGGGCAGGACGUCg -3'
miRNA:   3'- -GCG------UCuaGGugUCG------------CUCGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 1295 0.66 0.739258
Target:  5'- aGCAGGau--CAGCGGGUuaGGCGCCg -3'
miRNA:   3'- gCGUCUagguGUCGCUCGucUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 34396 0.66 0.739258
Target:  5'- gCGaCGGGUCgGCcGCGGGCAGcGCGg- -3'
miRNA:   3'- -GC-GUCUAGgUGuCGCUCGUCuUGCgg -5'
12910 5' -54.8 NC_003387.1 + 36955 0.66 0.739258
Target:  5'- aCGCGGugcCCGuCGGCGAGCAcAAuCGUCu -3'
miRNA:   3'- -GCGUCua-GGU-GUCGCUCGUcUU-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 38704 0.66 0.738202
Target:  5'- uGCAGcgCCAgcgcggcCuGCGGGCcGAacaGCGCCu -3'
miRNA:   3'- gCGUCuaGGU-------GuCGCUCGuCU---UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 34005 0.66 0.732904
Target:  5'- uCGgGGAaCCACAgcucggggucgguuuGCGcGCAGAuCGCCg -3'
miRNA:   3'- -GCgUCUaGGUGU---------------CGCuCGUCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 51424 0.66 0.728647
Target:  5'- uGCGGcgCCGCcucgaacuGCGccGGUcGAACGCCg -3'
miRNA:   3'- gCGUCuaGGUGu-------CGC--UCGuCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 406 0.66 0.728647
Target:  5'- aCGCGGAUCU-UGGCGuGCGuguCGCCg -3'
miRNA:   3'- -GCGUCUAGGuGUCGCuCGUcuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 16828 0.66 0.728647
Target:  5'- uGCGGGUaauugaGGCGAGCGGAuucucagacucgGCGUCg -3'
miRNA:   3'- gCGUCUAggug--UCGCUCGUCU------------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 28223 0.66 0.728647
Target:  5'- gCGCAGccgCgACGGCucgaccGAGCAGAuCGUCg -3'
miRNA:   3'- -GCGUCua-GgUGUCG------CUCGUCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 19268 0.66 0.728647
Target:  5'- aGCAGGUCgGugaacgugccguUAGCGAccguGCGGGccGCGCCc -3'
miRNA:   3'- gCGUCUAGgU------------GUCGCU----CGUCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 7094 0.66 0.728647
Target:  5'- aGCAGAcggaCCuaAGCGAGCuGcuCGCCg -3'
miRNA:   3'- gCGUCUa---GGugUCGCUCGuCuuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.