miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 39214 0.66 0.74976
Target:  5'- cCGCGG-UCgGgCAGUggGAGCGGGuaccgGCGCCg -3'
miRNA:   3'- -GCGUCuAGgU-GUCG--CUCGUCU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 47813 0.66 0.717938
Target:  5'- gCGCAGAggucggUCGCGauucuGCGGGCcu-GCGCCg -3'
miRNA:   3'- -GCGUCUa-----GGUGU-----CGCUCGucuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 15168 0.66 0.707143
Target:  5'- aCGCcGAUCCGCGG-GGGCuccaacAGCGUCg -3'
miRNA:   3'- -GCGuCUAGGUGUCgCUCGuc----UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3971 0.66 0.707143
Target:  5'- gGCGG--UCAgGGuCGGGCAGcGGCGCCg -3'
miRNA:   3'- gCGUCuaGGUgUC-GCUCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 20252 0.66 0.707143
Target:  5'- gGCGGcgCCGuccggUGGCGAGCcgacGGugGCCu -3'
miRNA:   3'- gCGUCuaGGU-----GUCGCUCGu---CUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 34692 0.66 0.707143
Target:  5'- gCGCAGGUagGCGGCcaugccGguGAAUGCCg -3'
miRNA:   3'- -GCGUCUAggUGUCGcu----CguCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 8131 0.66 0.706059
Target:  5'- gCGCGGG-CCGcCAGCucgucGAGCAGAuaggcucGCGCg -3'
miRNA:   3'- -GCGUCUaGGU-GUCG-----CUCGUCU-------UGCGg -5'
12910 5' -54.8 NC_003387.1 + 32005 0.66 0.706059
Target:  5'- gCGCGGAUCUGCucGGUgagccaccgcucgGAGCAGGggauACGUCg -3'
miRNA:   3'- -GCGUCUAGGUG--UCG-------------CUCGUCU----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3610 0.66 0.706059
Target:  5'- aGCAGccgCCugggGCGGCG-GCGGGggcacugGCGCCg -3'
miRNA:   3'- gCGUCua-GG----UGUCGCuCGUCU-------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 27484 0.66 0.717938
Target:  5'- gCGguGGUgC-CAGCGcGCgucguacacagAGAACGCCg -3'
miRNA:   3'- -GCguCUAgGuGUCGCuCG-----------UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 25265 0.66 0.717938
Target:  5'- gCGCug--CCGCGGCG-GCG--GCGCCg -3'
miRNA:   3'- -GCGucuaGGUGUCGCuCGUcuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 19268 0.66 0.728647
Target:  5'- aGCAGGUCgGugaacgugccguUAGCGAccguGCGGGccGCGCCc -3'
miRNA:   3'- gCGUCUAGgU------------GUCGCU----CGUCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 52082 0.66 0.74976
Target:  5'- uCGUcgAGggCCgACAGguCGGGCAGGuGCGCCa -3'
miRNA:   3'- -GCG--UCuaGG-UGUC--GCUCGUCU-UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 34396 0.66 0.739258
Target:  5'- gCGaCGGGUCgGCcGCGGGCAGcGCGg- -3'
miRNA:   3'- -GC-GUCUAGgUGuCGCUCGUCuUGCgg -5'
12910 5' -54.8 NC_003387.1 + 36955 0.66 0.739258
Target:  5'- aCGCGGugcCCGuCGGCGAGCAcAAuCGUCu -3'
miRNA:   3'- -GCGUCua-GGU-GUCGCUCGUcUU-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 1295 0.66 0.739258
Target:  5'- aGCAGGau--CAGCGGGUuaGGCGCCg -3'
miRNA:   3'- gCGUCUagguGUCGCUCGucUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 38704 0.66 0.738202
Target:  5'- uGCAGcgCCAgcgcggcCuGCGGGCcGAacaGCGCCu -3'
miRNA:   3'- gCGUCuaGGU-------GuCGCUCGuCU---UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 34005 0.66 0.732904
Target:  5'- uCGgGGAaCCACAgcucggggucgguuuGCGcGCAGAuCGCCg -3'
miRNA:   3'- -GCgUCUaGGUGU---------------CGCuCGUCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 406 0.66 0.728647
Target:  5'- aCGCGGAUCU-UGGCGuGCGuguCGCCg -3'
miRNA:   3'- -GCGUCUAGGuGUCGCuCGUcuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 16828 0.66 0.728647
Target:  5'- uGCGGGUaauugaGGCGAGCGGAuucucagacucgGCGUCg -3'
miRNA:   3'- gCGUCUAggug--UCGCUCGUCU------------UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.