miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 13804 1.11 0.000765
Target:  5'- uCGCAGAUCCACAGCGAGCAGAACGCCc -3'
miRNA:   3'- -GCGUCUAGGUGUCGCUCGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 33344 0.77 0.203312
Target:  5'- uCGgGGAUCgGCGGCaggccGGGCAGGACGUCg -3'
miRNA:   3'- -GCgUCUAGgUGUCG-----CUCGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 25535 0.76 0.220256
Target:  5'- cCGCAuGAgCCGCGacGCGGGCAGcGCGCCc -3'
miRNA:   3'- -GCGU-CUaGGUGU--CGCUCGUCuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 29738 0.76 0.226166
Target:  5'- gGCAGcuaCGCgGGCGAGCuGGACGCCg -3'
miRNA:   3'- gCGUCuagGUG-UCGCUCGuCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 49281 0.76 0.23221
Target:  5'- gGCAGAUCCGuuGCGGGCucAGcAACGUCg -3'
miRNA:   3'- gCGUCUAGGUguCGCUCG--UC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 34095 0.75 0.23839
Target:  5'- uGCGGGUCgCGCAGCGc-CAGGGCGCg -3'
miRNA:   3'- gCGUCUAG-GUGUCGCucGUCUUGCGg -5'
12910 5' -54.8 NC_003387.1 + 48860 0.75 0.244707
Target:  5'- cCGCGgcGAUCaGCGGCGAGCuGGcuGCGCCg -3'
miRNA:   3'- -GCGU--CUAGgUGUCGCUCGuCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 27525 0.75 0.264492
Target:  5'- gGCAGGUCgCACAuCGGGCAGucaGCCa -3'
miRNA:   3'- gCGUCUAG-GUGUcGCUCGUCuugCGG- -5'
12910 5' -54.8 NC_003387.1 + 5093 0.75 0.269291
Target:  5'- gGCGGAuuUCCugcaaugagcgauaACAGCGAGCuGAuCGCCg -3'
miRNA:   3'- gCGUCU--AGG--------------UGUCGCUCGuCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 33196 0.74 0.281239
Target:  5'- uGCGGAUCgCGCAGCGcaAGCGcgaggcccgcucggcGAugGCCg -3'
miRNA:   3'- gCGUCUAG-GUGUCGC--UCGU---------------CUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 34579 0.74 0.292864
Target:  5'- uCGCGGcgCCGCAGCG-GCGG-GCGUa -3'
miRNA:   3'- -GCGUCuaGGUGUCGCuCGUCuUGCGg -5'
12910 5' -54.8 NC_003387.1 + 17388 0.74 0.307919
Target:  5'- cCGCAGGUCaGCGGUGugauuGGCGGAuuCGCCg -3'
miRNA:   3'- -GCGUCUAGgUGUCGC-----UCGUCUu-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 8482 0.73 0.339781
Target:  5'- gGCGGuuagCUACGGCGGGCGGGcuugAgGCCg -3'
miRNA:   3'- gCGUCua--GGUGUCGCUCGUCU----UgCGG- -5'
12910 5' -54.8 NC_003387.1 + 45856 0.72 0.356586
Target:  5'- uCGCGGccugCgcaGCGGCGGGCAG-GCGCCa -3'
miRNA:   3'- -GCGUCua--Gg--UGUCGCUCGUCuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 18686 0.72 0.356586
Target:  5'- gGCAGAUCgGCGGCGucgacgucGCGGuGCGCg -3'
miRNA:   3'- gCGUCUAGgUGUCGCu-------CGUCuUGCGg -5'
12910 5' -54.8 NC_003387.1 + 46948 0.72 0.365205
Target:  5'- uGUcGAUCCGCGGCGAGCGcg--GCCg -3'
miRNA:   3'- gCGuCUAGGUGUCGCUCGUcuugCGG- -5'
12910 5' -54.8 NC_003387.1 + 357 0.72 0.365205
Target:  5'- gCGCGgucGAUCUGC-GCGAGCGGuuccGCGCCc -3'
miRNA:   3'- -GCGU---CUAGGUGuCGCUCGUCu---UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 13127 0.72 0.365205
Target:  5'- aGCAca-CCGCGGCGcAGCuugAGGACGCCg -3'
miRNA:   3'- gCGUcuaGGUGUCGC-UCG---UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 28860 0.72 0.373084
Target:  5'- uGCGGGUCggacuggUACcGCGAGCGGcacGGCGCCg -3'
miRNA:   3'- gCGUCUAG-------GUGuCGCUCGUC---UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 6617 0.72 0.373967
Target:  5'- aCGCAGcgCCAgGGaCGAcaGCAGggUGUCa -3'
miRNA:   3'- -GCGUCuaGGUgUC-GCU--CGUCuuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.