miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 26921 0.72 0.38287
Target:  5'- aGguGcAUCCACAGCucgccGAGCAGGcccaagAUGCCa -3'
miRNA:   3'- gCguC-UAGGUGUCG-----CUCGUCU------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 22590 0.72 0.391002
Target:  5'- gGcCAGggUCGCGGCGGGCAuGAuccauucGCGCCa -3'
miRNA:   3'- gC-GUCuaGGUGUCGCUCGU-CU-------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 17596 0.72 0.391912
Target:  5'- uGCAGuggCCGCcGCuuGAGCAGGcCGCCg -3'
miRNA:   3'- gCGUCua-GGUGuCG--CUCGUCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 21798 0.72 0.391912
Target:  5'- cCGCGGcggCCAgcuCGGCGAGCG--ACGCCg -3'
miRNA:   3'- -GCGUCua-GGU---GUCGCUCGUcuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 4161 0.71 0.41041
Target:  5'- cCGCGGGUCgcgaGCAuGCG-GCAGAacccgcACGCCg -3'
miRNA:   3'- -GCGUCUAGg---UGU-CGCuCGUCU------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 16570 0.71 0.41041
Target:  5'- uGCAGGUgCGCAaCG-GCGGcAACGCCg -3'
miRNA:   3'- gCGUCUAgGUGUcGCuCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 48199 0.71 0.414174
Target:  5'- gCGCGGGUCUGCcacgugaucGGCGAGCcaccgcgggcgcagcGGcAGCGCCa -3'
miRNA:   3'- -GCGUCUAGGUG---------UCGCUCG---------------UC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 49018 0.71 0.41986
Target:  5'- aCGCAGcgCCucgaAGCuGAGCAcGAACGCg -3'
miRNA:   3'- -GCGUCuaGGug--UCG-CUCGU-CUUGCGg -5'
12910 5' -54.8 NC_003387.1 + 47921 0.71 0.41986
Target:  5'- gCGCuGGUCgGCGGCaggcauGGGCAcGACGCCg -3'
miRNA:   3'- -GCGuCUAGgUGUCG------CUCGUcUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 38941 0.71 0.41986
Target:  5'- cCGCuGAUCUGCGGCGAcGC-GAAuUGCCg -3'
miRNA:   3'- -GCGuCUAGGUGUCGCU-CGuCUU-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 36001 0.71 0.42944
Target:  5'- gGCAcGAUCgACGGCGAggucGUGGuGCGCCg -3'
miRNA:   3'- gCGU-CUAGgUGUCGCU----CGUCuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 44833 0.71 0.42944
Target:  5'- gGCcGcUUCACGGCGGGCGGGugcugcgcuucgGCGCCc -3'
miRNA:   3'- gCGuCuAGGUGUCGCUCGUCU------------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 36244 0.71 0.438172
Target:  5'- gGCAGAUCgggGCGGUGAGCAuccggccGAcCGCCu -3'
miRNA:   3'- gCGUCUAGg--UGUCGCUCGU-------CUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 36692 0.71 0.439148
Target:  5'- uCGCGGcggCCAgCAgccGCGAGUcGAACGCCg -3'
miRNA:   3'- -GCGUCua-GGU-GU---CGCUCGuCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 45514 0.71 0.44898
Target:  5'- gCGCAGG-CC-CGGCGAGCuu-GCGCa -3'
miRNA:   3'- -GCGUCUaGGuGUCGCUCGucuUGCGg -5'
12910 5' -54.8 NC_003387.1 + 20954 0.71 0.44898
Target:  5'- gGCGGGUCauccggGCAG-GGGCGGGcaACGCCg -3'
miRNA:   3'- gCGUCUAGg-----UGUCgCUCGUCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 7191 0.7 0.458933
Target:  5'- aCG-AGAUCCGuugccuCGGCGAGCAGcuCGCUu -3'
miRNA:   3'- -GCgUCUAGGU------GUCGCUCGUCuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3831 0.7 0.458933
Target:  5'- uCGCAGGcgauuUCCGCGGUGGcccagcaaacacGCAGGGCGgCa -3'
miRNA:   3'- -GCGUCU-----AGGUGUCGCU------------CGUCUUGCgG- -5'
12910 5' -54.8 NC_003387.1 + 28033 0.7 0.458933
Target:  5'- aGCcGAUCCuCGGCGAGCuG-ACGaCCa -3'
miRNA:   3'- gCGuCUAGGuGUCGCUCGuCuUGC-GG- -5'
12910 5' -54.8 NC_003387.1 + 7552 0.7 0.479182
Target:  5'- uGCGGGUgCGCGGCucGguGAuCGCCu -3'
miRNA:   3'- gCGUCUAgGUGUCGcuCguCUuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.