miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 633 0.69 0.553134
Target:  5'- gGCAGcgucgCCGCcGCG-GCAGcGACGCCc -3'
miRNA:   3'- gCGUCua---GGUGuCGCuCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 50842 0.69 0.564008
Target:  5'- cCGCGGGUCU--GGcCGGGCA--GCGCCa -3'
miRNA:   3'- -GCGUCUAGGugUC-GCUCGUcuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3132 0.68 0.574937
Target:  5'- gGCucGA-CCGaGGCGGGCGgGAACGCCu -3'
miRNA:   3'- gCGu-CUaGGUgUCGCUCGU-CUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 44517 0.68 0.574937
Target:  5'- gCGCAGcgCCucgugcgcguCGGCGGGCAGcauCGCg -3'
miRNA:   3'- -GCGUCuaGGu---------GUCGCUCGUCuu-GCGg -5'
12910 5' -54.8 NC_003387.1 + 31726 0.68 0.574937
Target:  5'- gCGCAGGUCgCA-GGCGAGUuaGGggUGUCc -3'
miRNA:   3'- -GCGUCUAG-GUgUCGCUCG--UCuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 51928 0.68 0.574937
Target:  5'- -cCGGggCCACcGCG-GCAGcGACGCCg -3'
miRNA:   3'- gcGUCuaGGUGuCGCuCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 6234 0.68 0.584814
Target:  5'- uCGCAGAcucaccgacccaaUCgGCcuCGGGCAGGGuCGCCa -3'
miRNA:   3'- -GCGUCU-------------AGgUGucGCUCGUCUU-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 5588 0.68 0.585914
Target:  5'- gGCaaAGAUCCGCgacGGCGAaaagagcgagcuGCAGAaggcgcucgaacGCGCCg -3'
miRNA:   3'- gCG--UCUAGGUG---UCGCU------------CGUCU------------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3466 0.68 0.585914
Target:  5'- uCGCuGcgCgGCGGCGAGguGAAauCGCUu -3'
miRNA:   3'- -GCGuCuaGgUGUCGCUCguCUU--GCGG- -5'
12910 5' -54.8 NC_003387.1 + 2534 0.68 0.585914
Target:  5'- cCGguGuUCCGCAcGCGgucgccgcGGCAGAuccuCGCCg -3'
miRNA:   3'- -GCguCuAGGUGU-CGC--------UCGUCUu---GCGG- -5'
12910 5' -54.8 NC_003387.1 + 23931 0.68 0.59693
Target:  5'- uCGCcGGUCCACggccccgacugcGGCGgcuuaGGCGcGGGCGCCg -3'
miRNA:   3'- -GCGuCUAGGUG------------UCGC-----UCGU-CUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 42199 0.68 0.59693
Target:  5'- gGCGGGcgUGC-GCGAGCAGGACGgCg -3'
miRNA:   3'- gCGUCUagGUGuCGCUCGUCUUGCgG- -5'
12910 5' -54.8 NC_003387.1 + 2721 0.68 0.59693
Target:  5'- aCGCGG----GCGGCGGGCAGGccACGCa -3'
miRNA:   3'- -GCGUCuaggUGUCGCUCGUCU--UGCGg -5'
12910 5' -54.8 NC_003387.1 + 19969 0.68 0.601346
Target:  5'- uGCAcGUCCuggcucaggcccagcACGGUGucuuGCAGGGCGCCc -3'
miRNA:   3'- gCGUcUAGG---------------UGUCGCu---CGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 29458 0.68 0.607977
Target:  5'- uCGC-GAUCgAgaacggcgcCAGCGAGCAGGGCacgGCCc -3'
miRNA:   3'- -GCGuCUAGgU---------GUCGCUCGUCUUG---CGG- -5'
12910 5' -54.8 NC_003387.1 + 18417 0.68 0.607977
Target:  5'- gCGCGG-UCUgacCGGCGGGCAcGAcggccACGCCg -3'
miRNA:   3'- -GCGUCuAGGu--GUCGCUCGU-CU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 577 0.68 0.615723
Target:  5'- cCGCGGucgCCACGcgggcgcgcaucgcGaCGAGCAGcucGCGCCg -3'
miRNA:   3'- -GCGUCua-GGUGU--------------C-GCUCGUCu--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 22256 0.68 0.617937
Target:  5'- gGCAGcUCUACgucGGCGguggacuGGCAGAccaggGCGCCa -3'
miRNA:   3'- gCGUCuAGGUG---UCGC-------UCGUCU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 2097 0.68 0.619045
Target:  5'- gGCGGccGUCgGCGGCaccGAGCAGGgccaGCGUCa -3'
miRNA:   3'- gCGUC--UAGgUGUCG---CUCGUCU----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 32849 0.68 0.619045
Target:  5'- gGCGGua-CGCGGCGGGUGGuuGCGCa -3'
miRNA:   3'- gCGUCuagGUGUCGCUCGUCu-UGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.