miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 7776 0.66 0.725444
Target:  5'- cCGCaAGAUCCGCAagcuGCccgaggugcaggccGAGCuGcAACGCCu -3'
miRNA:   3'- -GCG-UCUAGGUGU----CG--------------CUCGuC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 25265 0.66 0.717938
Target:  5'- gCGCug--CCGCGGCG-GCG--GCGCCg -3'
miRNA:   3'- -GCGucuaGGUGUCGCuCGUcuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 24058 0.66 0.717938
Target:  5'- uCGCAGAUUCACcuGGCGcGCAacgGAacugugACGCUg -3'
miRNA:   3'- -GCGUCUAGGUG--UCGCuCGU---CU------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 47813 0.66 0.717938
Target:  5'- gCGCAGAggucggUCGCGauucuGCGGGCcu-GCGCCg -3'
miRNA:   3'- -GCGUCUa-----GGUGU-----CGCUCGucuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 12659 0.66 0.717938
Target:  5'- gCGCuGggCgACAGCGugauGCaguuccuuaugaAGAACGCCg -3'
miRNA:   3'- -GCGuCuaGgUGUCGCu---CG------------UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 26792 0.66 0.717938
Target:  5'- cCGCAG--CCAU-GUGGGUguGGGGCGCCg -3'
miRNA:   3'- -GCGUCuaGGUGuCGCUCG--UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 27484 0.66 0.717938
Target:  5'- gCGguGGUgC-CAGCGcGCgucguacacagAGAACGCCg -3'
miRNA:   3'- -GCguCUAgGuGUCGCuCG-----------UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 37348 0.66 0.716862
Target:  5'- cCGCGGGcugcgcuaUCUGCGGCaccugucGGGCGGcGGCGCCc -3'
miRNA:   3'- -GCGUCU--------AGGUGUCG-------CUCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 15168 0.66 0.707143
Target:  5'- aCGCcGAUCCGCGG-GGGCuccaacAGCGUCg -3'
miRNA:   3'- -GCGuCUAGGUGUCgCUCGuc----UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 46078 0.66 0.707143
Target:  5'- aGCGGGUCgACGaCGAGCccaAGAcggcCGCCg -3'
miRNA:   3'- gCGUCUAGgUGUcGCUCG---UCUu---GCGG- -5'
12910 5' -54.8 NC_003387.1 + 15103 0.66 0.707143
Target:  5'- cCGCGGAUC---GGCGucaaCGGGGCGCCu -3'
miRNA:   3'- -GCGUCUAGgugUCGCuc--GUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3971 0.66 0.707143
Target:  5'- gGCGG--UCAgGGuCGGGCAGcGGCGCCg -3'
miRNA:   3'- gCGUCuaGGUgUC-GCUCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 22571 0.66 0.707143
Target:  5'- gGCAGAUaacCCGCAcGCccGCGGGuuCGCCa -3'
miRNA:   3'- gCGUCUA---GGUGU-CGcuCGUCUu-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 34692 0.66 0.707143
Target:  5'- gCGCAGGUagGCGGCcaugccGguGAAUGCCg -3'
miRNA:   3'- -GCGUCUAggUGUCGcu----CguCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 4792 0.66 0.707143
Target:  5'- uCGCAGGcCCGCGGCGA-CGGccacAACGgCa -3'
miRNA:   3'- -GCGUCUaGGUGUCGCUcGUC----UUGCgG- -5'
12910 5' -54.8 NC_003387.1 + 20252 0.66 0.707143
Target:  5'- gGCGGcgCCGuccggUGGCGAGCcgacGGugGCCu -3'
miRNA:   3'- gCGUCuaGGU-----GUCGCUCGu---CUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 8131 0.66 0.706059
Target:  5'- gCGCGGG-CCGcCAGCucgucGAGCAGAuaggcucGCGCg -3'
miRNA:   3'- -GCGUCUaGGU-GUCG-----CUCGUCU-------UGCGg -5'
12910 5' -54.8 NC_003387.1 + 32005 0.66 0.706059
Target:  5'- gCGCGGAUCUGCucGGUgagccaccgcucgGAGCAGGggauACGUCg -3'
miRNA:   3'- -GCGUCUAGGUG--UCG-------------CUCGUCU----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3610 0.66 0.706059
Target:  5'- aGCAGccgCCugggGCGGCG-GCGGGggcacugGCGCCg -3'
miRNA:   3'- gCGUCua-GG----UGUCGCuCGUCU-------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 51619 0.66 0.696273
Target:  5'- aGCGGua--GCGGCGGGCgcaggggcaaGGGugGCCg -3'
miRNA:   3'- gCGUCuaggUGUCGCUCG----------UCUugCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.