miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 52045 0.67 0.652278
Target:  5'- uGCGGucggCCACcGCG-GCAGcGACGUCg -3'
miRNA:   3'- gCGUCua--GGUGuCGCuCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 2142 0.67 0.645636
Target:  5'- aCGUGGAguUCCccgaggacucgaugaGCcGCGAGCAGcucGGCGCCu -3'
miRNA:   3'- -GCGUCU--AGG---------------UGuCGCUCGUC---UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 1045 0.67 0.641205
Target:  5'- uGCGGAaagucUCUGCGGcCGuGCGGGuccgguGCGCCg -3'
miRNA:   3'- gCGUCU-----AGGUGUC-GCuCGUCU------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 42232 0.67 0.641205
Target:  5'- aGCuccucGAUCgACAGCGGGCcac-CGCCg -3'
miRNA:   3'- gCGu----CUAGgUGUCGCUCGucuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 49076 0.67 0.641205
Target:  5'- gGCAGGcUCGCGGCGcGCAG-GCGUa -3'
miRNA:   3'- gCGUCUaGGUGUCGCuCGUCuUGCGg -5'
12910 5' -54.8 NC_003387.1 + 21775 0.67 0.641205
Target:  5'- gCGCGGG-CCGCgcucgccgaGGCGGcCAGGGCGUCg -3'
miRNA:   3'- -GCGUCUaGGUG---------UCGCUcGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 4276 0.67 0.641205
Target:  5'- uCGCGGGcgauggaggCCGCgGGCGAGCAGcGCaCCg -3'
miRNA:   3'- -GCGUCUa--------GGUG-UCGCUCGUCuUGcGG- -5'
12910 5' -54.8 NC_003387.1 + 37992 0.67 0.641205
Target:  5'- gGCGGugccgagCCAC-GCGGGCAGcggguCGCCc -3'
miRNA:   3'- gCGUCua-----GGUGuCGCUCGUCuu---GCGG- -5'
12910 5' -54.8 NC_003387.1 + 35332 0.68 0.630124
Target:  5'- cCGCGGcgCCAguugucguCGGCGuacuuGCGG-GCGCCg -3'
miRNA:   3'- -GCGUCuaGGU--------GUCGCu----CGUCuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 41294 0.68 0.630124
Target:  5'- cCGCGGAguugCCgugcuuauucggGCAGCG-GUAGugcACGCCg -3'
miRNA:   3'- -GCGUCUa---GG------------UGUCGCuCGUCu--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 32849 0.68 0.619045
Target:  5'- gGCGGua-CGCGGCGGGUGGuuGCGCa -3'
miRNA:   3'- gCGUCuagGUGUCGCUCGUCu-UGCGg -5'
12910 5' -54.8 NC_003387.1 + 2097 0.68 0.619045
Target:  5'- gGCGGccGUCgGCGGCaccGAGCAGGgccaGCGUCa -3'
miRNA:   3'- gCGUC--UAGgUGUCG---CUCGUCU----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 5736 0.68 0.619045
Target:  5'- gGCaAGA-CCGaGGaCGAGCuGAACGCCu -3'
miRNA:   3'- gCG-UCUaGGUgUC-GCUCGuCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 49214 0.68 0.619045
Target:  5'- cCGCaacGGAUCUgccggucgagGCGGcCGAGCGGcugcucGACGCCg -3'
miRNA:   3'- -GCG---UCUAGG----------UGUC-GCUCGUC------UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 22256 0.68 0.617937
Target:  5'- gGCAGcUCUACgucGGCGguggacuGGCAGAccaggGCGCCa -3'
miRNA:   3'- gCGUCuAGGUG---UCGC-------UCGUCU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 577 0.68 0.615723
Target:  5'- cCGCGGucgCCACGcgggcgcgcaucgcGaCGAGCAGcucGCGCCg -3'
miRNA:   3'- -GCGUCua-GGUGU--------------C-GCUCGUCu--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 29458 0.68 0.607977
Target:  5'- uCGC-GAUCgAgaacggcgcCAGCGAGCAGGGCacgGCCc -3'
miRNA:   3'- -GCGuCUAGgU---------GUCGCUCGUCUUG---CGG- -5'
12910 5' -54.8 NC_003387.1 + 18417 0.68 0.607977
Target:  5'- gCGCGG-UCUgacCGGCGGGCAcGAcggccACGCCg -3'
miRNA:   3'- -GCGUCuAGGu--GUCGCUCGU-CU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 19969 0.68 0.601346
Target:  5'- uGCAcGUCCuggcucaggcccagcACGGUGucuuGCAGGGCGCCc -3'
miRNA:   3'- gCGUcUAGG---------------UGUCGCu---CGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 23931 0.68 0.59693
Target:  5'- uCGCcGGUCCACggccccgacugcGGCGgcuuaGGCGcGGGCGCCg -3'
miRNA:   3'- -GCGuCUAGGUG------------UCGC-----UCGU-CUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.