miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 225 0.67 0.674357
Target:  5'- aGCAGGcCCAgcuCGGCGGcGCGGAuCGCg -3'
miRNA:   3'- gCGUCUaGGU---GUCGCU-CGUCUuGCGg -5'
12910 5' -54.8 NC_003387.1 + 357 0.72 0.365205
Target:  5'- gCGCGgucGAUCUGC-GCGAGCGGuuccGCGCCc -3'
miRNA:   3'- -GCGU---CUAGGUGuCGCUCGUCu---UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 406 0.66 0.728647
Target:  5'- aCGCGGAUCU-UGGCGuGCGuguCGCCg -3'
miRNA:   3'- -GCGUCUAGGuGUCGCuCGUcuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 577 0.68 0.615723
Target:  5'- cCGCGGucgCCACGcgggcgcgcaucgcGaCGAGCAGcucGCGCCg -3'
miRNA:   3'- -GCGUCua-GGUGU--------------C-GCUCGUCu--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 633 0.69 0.553134
Target:  5'- gGCAGcgucgCCGCcGCG-GCAGcGACGCCc -3'
miRNA:   3'- gCGUCua---GGUGuCGCuCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 1045 0.67 0.641205
Target:  5'- uGCGGAaagucUCUGCGGcCGuGCGGGuccgguGCGCCg -3'
miRNA:   3'- gCGUCU-----AGGUGUC-GCuCGUCU------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 1295 0.66 0.739258
Target:  5'- aGCAGGau--CAGCGGGUuaGGCGCCg -3'
miRNA:   3'- gCGUCUagguGUCGCUCGucUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 1710 0.66 0.74976
Target:  5'- --uGGAUCgCugAGCGGGCcGGGCGgCg -3'
miRNA:   3'- gcgUCUAG-GugUCGCUCGuCUUGCgG- -5'
12910 5' -54.8 NC_003387.1 + 2097 0.68 0.619045
Target:  5'- gGCGGccGUCgGCGGCaccGAGCAGGgccaGCGUCa -3'
miRNA:   3'- gCGUC--UAGgUGUCG---CUCGUCU----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 2142 0.67 0.645636
Target:  5'- aCGUGGAguUCCccgaggacucgaugaGCcGCGAGCAGcucGGCGCCu -3'
miRNA:   3'- -GCGUCU--AGG---------------UGuCGCUCGUC---UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 2534 0.68 0.585914
Target:  5'- cCGguGuUCCGCAcGCGgucgccgcGGCAGAuccuCGCCg -3'
miRNA:   3'- -GCguCuAGGUGU-CGC--------UCGUCUu---GCGG- -5'
12910 5' -54.8 NC_003387.1 + 2624 0.66 0.74976
Target:  5'- gGCgaGGAUcugCCGCGGCGAccgcguGCGGAACaCCg -3'
miRNA:   3'- gCG--UCUA---GGUGUCGCU------CGUCUUGcGG- -5'
12910 5' -54.8 NC_003387.1 + 2721 0.68 0.59693
Target:  5'- aCGCGG----GCGGCGGGCAGGccACGCa -3'
miRNA:   3'- -GCGUCuaggUGUCGCUCGUCU--UGCGg -5'
12910 5' -54.8 NC_003387.1 + 3024 0.67 0.685341
Target:  5'- cCGCuGAUCaCGCGcuGCGGGUu-GGCGCCg -3'
miRNA:   3'- -GCGuCUAG-GUGU--CGCUCGucUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3132 0.68 0.574937
Target:  5'- gGCucGA-CCGaGGCGGGCGgGAACGCCu -3'
miRNA:   3'- gCGu-CUaGGUgUCGCUCGU-CUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3283 0.66 0.696273
Target:  5'- aCGC---UUCGCGGCGAGCuu-GCGCUg -3'
miRNA:   3'- -GCGucuAGGUGUCGCUCGucuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3466 0.68 0.585914
Target:  5'- uCGCuGcgCgGCGGCGAGguGAAauCGCUu -3'
miRNA:   3'- -GCGuCuaGgUGUCGCUCguCUU--GCGG- -5'
12910 5' -54.8 NC_003387.1 + 3610 0.66 0.706059
Target:  5'- aGCAGccgCCugggGCGGCG-GCGGGggcacugGCGCCg -3'
miRNA:   3'- gCGUCua-GG----UGUCGCuCGUCU-------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3831 0.7 0.458933
Target:  5'- uCGCAGGcgauuUCCGCGGUGGcccagcaaacacGCAGGGCGgCa -3'
miRNA:   3'- -GCGUCU-----AGGUGUCGCU------------CGUCUUGCgG- -5'
12910 5' -54.8 NC_003387.1 + 3971 0.66 0.707143
Target:  5'- gGCGG--UCAgGGuCGGGCAGcGGCGCCg -3'
miRNA:   3'- gCGUCuaGGUgUC-GCUCGUC-UUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.