miRNA display CGI


Results 41 - 60 of 152 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 12474 0.66 0.739258
Target:  5'- cCGCGGG-CCugGcgucCGAGCAGAACcuacaGCCc -3'
miRNA:   3'- -GCGUCUaGGugUc---GCUCGUCUUG-----CGG- -5'
12910 5' -54.8 NC_003387.1 + 12548 0.7 0.479182
Target:  5'- cCGCAGAUCaagACgauuggcggcuGGCGGucGCAGGACGCUu -3'
miRNA:   3'- -GCGUCUAGg--UG-----------UCGCU--CGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 12659 0.66 0.717938
Target:  5'- gCGCuGggCgACAGCGugauGCaguuccuuaugaAGAACGCCg -3'
miRNA:   3'- -GCGuCuaGgUGUCGCu---CG------------UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 13127 0.72 0.365205
Target:  5'- aGCAca-CCGCGGCGcAGCuugAGGACGCCg -3'
miRNA:   3'- gCGUcuaGGUGUCGC-UCG---UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 13546 0.66 0.739258
Target:  5'- uCGCuguucaAGggCCugGGCagcccgaucgacGGGCAGGACGUCg -3'
miRNA:   3'- -GCG------UCuaGGugUCG------------CUCGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 13804 1.11 0.000765
Target:  5'- uCGCAGAUCCACAGCGAGCAGAACGCCc -3'
miRNA:   3'- -GCGUCUAGGUGUCGCUCGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 14714 0.66 0.696273
Target:  5'- gCGCGGGUCU--GGCGAGguguggauuCAGGACGgCa -3'
miRNA:   3'- -GCGUCUAGGugUCGCUC---------GUCUUGCgG- -5'
12910 5' -54.8 NC_003387.1 + 15103 0.66 0.707143
Target:  5'- cCGCGGAUC---GGCGucaaCGGGGCGCCu -3'
miRNA:   3'- -GCGUCUAGgugUCGCuc--GUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 15168 0.66 0.707143
Target:  5'- aCGCcGAUCCGCGG-GGGCuccaacAGCGUCg -3'
miRNA:   3'- -GCGuCUAGGUGUCgCUCGuc----UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 16570 0.71 0.41041
Target:  5'- uGCAGGUgCGCAaCG-GCGGcAACGCCg -3'
miRNA:   3'- gCGUCUAgGUGUcGCuCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 16828 0.66 0.728647
Target:  5'- uGCGGGUaauugaGGCGAGCGGAuucucagacucgGCGUCg -3'
miRNA:   3'- gCGUCUAggug--UCGCUCGUCU------------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 17388 0.74 0.307919
Target:  5'- cCGCAGGUCaGCGGUGugauuGGCGGAuuCGCCg -3'
miRNA:   3'- -GCGUCUAGgUGUCGC-----UCGUCUu-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 17596 0.72 0.391912
Target:  5'- uGCAGuggCCGCcGCuuGAGCAGGcCGCCg -3'
miRNA:   3'- gCGUCua-GGUGuCG--CUCGUCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 18417 0.68 0.607977
Target:  5'- gCGCGG-UCUgacCGGCGGGCAcGAcggccACGCCg -3'
miRNA:   3'- -GCGUCuAGGu--GUCGCUCGU-CU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 18686 0.72 0.356586
Target:  5'- gGCAGAUCgGCGGCGucgacgucGCGGuGCGCg -3'
miRNA:   3'- gCGUCUAGgUGUCGCu-------CGUCuUGCGg -5'
12910 5' -54.8 NC_003387.1 + 19268 0.66 0.728647
Target:  5'- aGCAGGUCgGugaacgugccguUAGCGAccguGCGGGccGCGCCc -3'
miRNA:   3'- gCGUCUAGgU------------GUCGCU----CGUCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 19969 0.68 0.601346
Target:  5'- uGCAcGUCCuggcucaggcccagcACGGUGucuuGCAGGGCGCCc -3'
miRNA:   3'- gCGUcUAGG---------------UGUCGCu---CGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 20252 0.66 0.707143
Target:  5'- gGCGGcgCCGuccggUGGCGAGCcgacGGugGCCu -3'
miRNA:   3'- gCGUCuaGGU-----GUCGCUCGu---CUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 20954 0.71 0.44898
Target:  5'- gGCGGGUCauccggGCAG-GGGCGGGcaACGCCg -3'
miRNA:   3'- gCGUCUAGg-----UGUCgCUCGUCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 21050 0.67 0.674357
Target:  5'- uCGCGGcAUUCGCGGCGuuGCccgccccugcccGGAugACGCCg -3'
miRNA:   3'- -GCGUC-UAGGUGUCGCu-CG------------UCU--UGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.