miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 21775 0.67 0.641205
Target:  5'- gCGCGGG-CCGCgcucgccgaGGCGGcCAGGGCGUCg -3'
miRNA:   3'- -GCGUCUaGGUG---------UCGCUcGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 21798 0.72 0.391912
Target:  5'- cCGCGGcggCCAgcuCGGCGAGCG--ACGCCg -3'
miRNA:   3'- -GCGUCua-GGU---GUCGCUCGUcuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 22256 0.68 0.617937
Target:  5'- gGCAGcUCUACgucGGCGguggacuGGCAGAccaggGCGCCa -3'
miRNA:   3'- gCGUCuAGGUG---UCGC-------UCGUCU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 22571 0.66 0.707143
Target:  5'- gGCAGAUaacCCGCAcGCccGCGGGuuCGCCa -3'
miRNA:   3'- gCGUCUA---GGUGU-CGcuCGUCUu-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 22590 0.72 0.391002
Target:  5'- gGcCAGggUCGCGGCGGGCAuGAuccauucGCGCCa -3'
miRNA:   3'- gC-GUCuaGGUGUCGCUCGU-CU-------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 23337 0.67 0.685341
Target:  5'- uGCAGGaugacCCGCugcucacccGCGAGCAaguGAugGCCg -3'
miRNA:   3'- gCGUCUa----GGUGu--------CGCUCGU---CUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 23931 0.68 0.59693
Target:  5'- uCGCcGGUCCACggccccgacugcGGCGgcuuaGGCGcGGGCGCCg -3'
miRNA:   3'- -GCGuCUAGGUG------------UCGC-----UCGU-CUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 24058 0.66 0.717938
Target:  5'- uCGCAGAUUCACcuGGCGcGCAacgGAacugugACGCUg -3'
miRNA:   3'- -GCGUCUAGGUG--UCGCuCGU---CU------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 24935 0.67 0.674357
Target:  5'- cCGC-GA-CCgACGGCGGGCcgccuGAugGCCu -3'
miRNA:   3'- -GCGuCUaGG-UGUCGCUCGu----CUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 25163 0.69 0.531584
Target:  5'- aCGCAGGUUCGgcuCGGCGcGguGGccccgGCGCCg -3'
miRNA:   3'- -GCGUCUAGGU---GUCGCuCguCU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 25265 0.66 0.717938
Target:  5'- gCGCug--CCGCGGCG-GCG--GCGCCg -3'
miRNA:   3'- -GCGucuaGGUGUCGCuCGUcuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 25535 0.76 0.220256
Target:  5'- cCGCAuGAgCCGCGacGCGGGCAGcGCGCCc -3'
miRNA:   3'- -GCGU-CUaGGUGU--CGCUCGUCuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 25902 0.7 0.489469
Target:  5'- aGCAGG-CCACcGCccaggccgccGAGCAGGcCGCCa -3'
miRNA:   3'- gCGUCUaGGUGuCG----------CUCGUCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 26106 0.69 0.553134
Target:  5'- uGCGGcgCCGuCGGCGGGUuGGugGCg -3'
miRNA:   3'- gCGUCuaGGU-GUCGCUCGuCUugCGg -5'
12910 5' -54.8 NC_003387.1 + 26214 0.67 0.685341
Target:  5'- gGuCAGG-CCGC-GCGAGCGGcgacggacGCGCCg -3'
miRNA:   3'- gC-GUCUaGGUGuCGCUCGUCu-------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 26515 0.69 0.542323
Target:  5'- uCGC-GAUCCACGGCGugAGCuGcuCGUCg -3'
miRNA:   3'- -GCGuCUAGGUGUCGC--UCGuCuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 26792 0.66 0.717938
Target:  5'- cCGCAG--CCAU-GUGGGUguGGGGCGCCg -3'
miRNA:   3'- -GCGUCuaGGUGuCGCUCG--UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 26921 0.72 0.38287
Target:  5'- aGguGcAUCCACAGCucgccGAGCAGGcccaagAUGCCa -3'
miRNA:   3'- gCguC-UAGGUGUCG-----CUCGUCU------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 27266 0.69 0.553134
Target:  5'- gGCAug-CCugGucgcGCGAGgAGAACGCCg -3'
miRNA:   3'- gCGUcuaGGugU----CGCUCgUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 27484 0.66 0.717938
Target:  5'- gCGguGGUgC-CAGCGcGCgucguacacagAGAACGCCg -3'
miRNA:   3'- -GCguCUAgGuGUCGCuCG-----------UCUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.