miRNA display CGI


Results 81 - 100 of 152 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 27525 0.75 0.264492
Target:  5'- gGCAGGUCgCACAuCGGGCAGucaGCCa -3'
miRNA:   3'- gCGUCUAG-GUGUcGCUCGUCuugCGG- -5'
12910 5' -54.8 NC_003387.1 + 27669 0.66 0.739258
Target:  5'- gGCAGuAUCuCGCAGCucuGGCGcGAgugcuGCGCCg -3'
miRNA:   3'- gCGUC-UAG-GUGUCGc--UCGU-CU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 27855 0.69 0.525177
Target:  5'- cCGCGGcgCCACgaucgacaccggcgcGGuCGAGCAGGA-GCCc -3'
miRNA:   3'- -GCGUCuaGGUG---------------UC-GCUCGUCUUgCGG- -5'
12910 5' -54.8 NC_003387.1 + 28033 0.7 0.458933
Target:  5'- aGCcGAUCCuCGGCGAGCuG-ACGaCCa -3'
miRNA:   3'- gCGuCUAGGuGUCGCUCGuCuUGC-GG- -5'
12910 5' -54.8 NC_003387.1 + 28223 0.66 0.728647
Target:  5'- gCGCAGccgCgACGGCucgaccGAGCAGAuCGUCg -3'
miRNA:   3'- -GCGUCua-GgUGUCG------CUCGUCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 28860 0.72 0.373084
Target:  5'- uGCGGGUCggacuggUACcGCGAGCGGcacGGCGCCg -3'
miRNA:   3'- gCGUCUAG-------GUGuCGCUCGUC---UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 29293 0.66 0.739258
Target:  5'- aCGCccuGuUCCcCGGCGAccgcggGCAcGAGCGCCa -3'
miRNA:   3'- -GCGu--CuAGGuGUCGCU------CGU-CUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 29415 0.66 0.74976
Target:  5'- gCGCAGGaggaggccgCCGCAGCGGcccgcGCGGu-CGCUa -3'
miRNA:   3'- -GCGUCUa--------GGUGUCGCU-----CGUCuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 29458 0.68 0.607977
Target:  5'- uCGC-GAUCgAgaacggcgcCAGCGAGCAGGGCacgGCCc -3'
miRNA:   3'- -GCGuCUAGgU---------GUCGCUCGUCUUG---CGG- -5'
12910 5' -54.8 NC_003387.1 + 29498 0.67 0.674357
Target:  5'- gCGCGGG-CCGCuGCG-GCGGccuccuccuGCGCCc -3'
miRNA:   3'- -GCGUCUaGGUGuCGCuCGUCu--------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 29738 0.76 0.226166
Target:  5'- gGCAGcuaCGCgGGCGAGCuGGACGCCg -3'
miRNA:   3'- gCGUCuagGUG-UCGCUCGuCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 29896 0.7 0.489469
Target:  5'- aGCAGAUugCUACGGgcCGGGCGGGugACGCUa -3'
miRNA:   3'- gCGUCUA--GGUGUC--GCUCGUCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 31726 0.68 0.574937
Target:  5'- gCGCAGGUCgCA-GGCGAGUuaGGggUGUCc -3'
miRNA:   3'- -GCGUCUAG-GUgUCGCUCG--UCuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 31927 0.69 0.553134
Target:  5'- aGCGGuggCUAC--CGAGCAGAuccGCGCCg -3'
miRNA:   3'- gCGUCua-GGUGucGCUCGUCU---UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 32005 0.66 0.706059
Target:  5'- gCGCGGAUCUGCucGGUgagccaccgcucgGAGCAGGggauACGUCg -3'
miRNA:   3'- -GCGUCUAGGUG--UCG-------------CUCGUCU----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 32849 0.68 0.619045
Target:  5'- gGCGGua-CGCGGCGGGUGGuuGCGCa -3'
miRNA:   3'- gCGUCuagGUGUCGCUCGUCu-UGCGg -5'
12910 5' -54.8 NC_003387.1 + 32928 0.67 0.674357
Target:  5'- gCGCAGu----CGGCGAcGCGGAAcCGCCc -3'
miRNA:   3'- -GCGUCuagguGUCGCU-CGUCUU-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 33196 0.74 0.281239
Target:  5'- uGCGGAUCgCGCAGCGcaAGCGcgaggcccgcucggcGAugGCCg -3'
miRNA:   3'- gCGUCUAG-GUGUCGC--UCGU---------------CUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 33344 0.77 0.203312
Target:  5'- uCGgGGAUCgGCGGCaggccGGGCAGGACGUCg -3'
miRNA:   3'- -GCgUCUAGgUGUCG-----CUCGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 34005 0.66 0.732904
Target:  5'- uCGgGGAaCCACAgcucggggucgguuuGCGcGCAGAuCGCCg -3'
miRNA:   3'- -GCgUCUaGGUGU---------------CGCuCGUCUuGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.