miRNA display CGI


Results 101 - 120 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 34095 0.75 0.23839
Target:  5'- uGCGGGUCgCGCAGCGc-CAGGGCGCg -3'
miRNA:   3'- gCGUCUAG-GUGUCGCucGUCUUGCGg -5'
12910 5' -54.8 NC_003387.1 + 34396 0.66 0.739258
Target:  5'- gCGaCGGGUCgGCcGCGGGCAGcGCGg- -3'
miRNA:   3'- -GC-GUCUAGgUGuCGCUCGUCuUGCgg -5'
12910 5' -54.8 NC_003387.1 + 34579 0.74 0.292864
Target:  5'- uCGCGGcgCCGCAGCG-GCGG-GCGUa -3'
miRNA:   3'- -GCGUCuaGGUGUCGCuCGUCuUGCGg -5'
12910 5' -54.8 NC_003387.1 + 34692 0.66 0.707143
Target:  5'- gCGCAGGUagGCGGCcaugccGguGAAUGCCg -3'
miRNA:   3'- -GCGUCUAggUGUCGcu----CguCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 35332 0.68 0.630124
Target:  5'- cCGCGGcgCCAguugucguCGGCGuacuuGCGG-GCGCCg -3'
miRNA:   3'- -GCGUCuaGGU--------GUCGCu----CGUCuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 36001 0.71 0.42944
Target:  5'- gGCAcGAUCgACGGCGAggucGUGGuGCGCCg -3'
miRNA:   3'- gCGU-CUAGgUGUCGCU----CGUCuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 36244 0.71 0.438172
Target:  5'- gGCAGAUCgggGCGGUGAGCAuccggccGAcCGCCu -3'
miRNA:   3'- gCGUCUAGg--UGUCGCUCGU-------CUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 36528 0.66 0.696273
Target:  5'- gGCuGcgCCugGGCGAGCuGcuCGCg -3'
miRNA:   3'- gCGuCuaGGugUCGCUCGuCuuGCGg -5'
12910 5' -54.8 NC_003387.1 + 36692 0.71 0.439148
Target:  5'- uCGCGGcggCCAgCAgccGCGAGUcGAACGCCg -3'
miRNA:   3'- -GCGUCua-GGU-GU---CGCUCGuCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 36743 0.7 0.504043
Target:  5'- aCGCGG--CCAgguCGGCGAGCcggugaugccacucgGGGGCGCCg -3'
miRNA:   3'- -GCGUCuaGGU---GUCGCUCG---------------UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 36955 0.66 0.739258
Target:  5'- aCGCGGugcCCGuCGGCGAGCAcAAuCGUCu -3'
miRNA:   3'- -GCGUCua-GGU-GUCGCUCGUcUU-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 37348 0.66 0.716862
Target:  5'- cCGCGGGcugcgcuaUCUGCGGCaccugucGGGCGGcGGCGCCc -3'
miRNA:   3'- -GCGUCU--------AGGUGUCG-------CUCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 37421 0.67 0.663332
Target:  5'- cCGCAGAUagcgcagcCCGCGGCGGGggcucguccaCGGcACGUCg -3'
miRNA:   3'- -GCGUCUA--------GGUGUCGCUC----------GUCuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 37798 0.69 0.553134
Target:  5'- gCGCAGcacCCGCGGuCGcAGCAGcGCGCg -3'
miRNA:   3'- -GCGUCua-GGUGUC-GC-UCGUCuUGCGg -5'
12910 5' -54.8 NC_003387.1 + 37992 0.67 0.641205
Target:  5'- gGCGGugccgagCCAC-GCGGGCAGcggguCGCCc -3'
miRNA:   3'- gCGUCua-----GGUGuCGCUCGUCuu---GCGG- -5'
12910 5' -54.8 NC_003387.1 + 38704 0.66 0.738202
Target:  5'- uGCAGcgCCAgcgcggcCuGCGGGCcGAacaGCGCCu -3'
miRNA:   3'- gCGUCuaGGU-------GuCGCUCGuCU---UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 38941 0.71 0.41986
Target:  5'- cCGCuGAUCUGCGGCGAcGC-GAAuUGCCg -3'
miRNA:   3'- -GCGuCUAGGUGUCGCU-CGuCUU-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 39214 0.66 0.74976
Target:  5'- cCGCGG-UCgGgCAGUggGAGCGGGuaccgGCGCCg -3'
miRNA:   3'- -GCGUCuAGgU-GUCG--CUCGUCU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 40922 0.69 0.542323
Target:  5'- gGCGGuggCCugauggACGGCGAGCuGGuCGCCa -3'
miRNA:   3'- gCGUCua-GG------UGUCGCUCGuCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 41294 0.68 0.630124
Target:  5'- cCGCGGAguugCCgugcuuauucggGCAGCG-GUAGugcACGCCg -3'
miRNA:   3'- -GCGUCUa---GG------------UGUCGCuCGUCu--UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.