miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 52186 0.7 0.479182
Target:  5'- aGCAGGUCgaGCAGgacgcuguCGAGCAGGcCGCUg -3'
miRNA:   3'- gCGUCUAGg-UGUC--------GCUCGUCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 52082 0.66 0.74976
Target:  5'- uCGUcgAGggCCgACAGguCGGGCAGGuGCGCCa -3'
miRNA:   3'- -GCG--UCuaGG-UGUC--GCUCGUCU-UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 52045 0.67 0.652278
Target:  5'- uGCGGucggCCACcGCG-GCAGcGACGUCg -3'
miRNA:   3'- gCGUCua--GGUGuCGCuCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 51928 0.68 0.574937
Target:  5'- -cCGGggCCACcGCG-GCAGcGACGCCg -3'
miRNA:   3'- gcGUCuaGGUGuCGCuCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 51716 0.7 0.510346
Target:  5'- aCGCaAGG-CCGCAGCGcauccgaccccGGUcGAGCGCCu -3'
miRNA:   3'- -GCG-UCUaGGUGUCGC-----------UCGuCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 51619 0.66 0.696273
Target:  5'- aGCGGua--GCGGCGGGCgcaggggcaaGGGugGCCg -3'
miRNA:   3'- gCGUCuaggUGUCGCUCG----------UCUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 51424 0.66 0.728647
Target:  5'- uGCGGcgCCGCcucgaacuGCGccGGUcGAACGCCg -3'
miRNA:   3'- gCGUCuaGGUGu-------CGC--UCGuCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 50842 0.69 0.564008
Target:  5'- cCGCGGGUCU--GGcCGGGCA--GCGCCa -3'
miRNA:   3'- -GCGUCUAGGugUC-GCUCGUcuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 49410 0.67 0.663332
Target:  5'- gGCGGAUgCGgaGGUGGGCGcguGAACGUCg -3'
miRNA:   3'- gCGUCUAgGUg-UCGCUCGU---CUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 49281 0.76 0.23221
Target:  5'- gGCAGAUCCGuuGCGGGCucAGcAACGUCg -3'
miRNA:   3'- gCGUCUAGGUguCGCUCG--UC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 49214 0.68 0.619045
Target:  5'- cCGCaacGGAUCUgccggucgagGCGGcCGAGCGGcugcucGACGCCg -3'
miRNA:   3'- -GCG---UCUAGG----------UGUC-GCUCGUC------UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 49076 0.67 0.641205
Target:  5'- gGCAGGcUCGCGGCGcGCAG-GCGUa -3'
miRNA:   3'- gCGUCUaGGUGUCGCuCGUCuUGCGg -5'
12910 5' -54.8 NC_003387.1 + 49018 0.71 0.41986
Target:  5'- aCGCAGcgCCucgaAGCuGAGCAcGAACGCg -3'
miRNA:   3'- -GCGUCuaGGug--UCG-CUCGU-CUUGCGg -5'
12910 5' -54.8 NC_003387.1 + 48860 0.75 0.244707
Target:  5'- cCGCGgcGAUCaGCGGCGAGCuGGcuGCGCCg -3'
miRNA:   3'- -GCGU--CUAGgUGUCGCUCGuCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 48199 0.71 0.414174
Target:  5'- gCGCGGGUCUGCcacgugaucGGCGAGCcaccgcgggcgcagcGGcAGCGCCa -3'
miRNA:   3'- -GCGUCUAGGUG---------UCGCUCG---------------UC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 48135 0.67 0.685341
Target:  5'- gGCAGAcCCGC-GC--GCAGcGCGCCa -3'
miRNA:   3'- gCGUCUaGGUGuCGcuCGUCuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 47921 0.71 0.41986
Target:  5'- gCGCuGGUCgGCGGCaggcauGGGCAcGACGCCg -3'
miRNA:   3'- -GCGuCUAGgUGUCG------CUCGUcUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 47813 0.66 0.717938
Target:  5'- gCGCAGAggucggUCGCGauucuGCGGGCcu-GCGCCg -3'
miRNA:   3'- -GCGUCUa-----GGUGU-----CGCUCGucuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 46948 0.72 0.365205
Target:  5'- uGUcGAUCCGCGGCGAGCGcg--GCCg -3'
miRNA:   3'- gCGuCUAGGUGUCGCUCGUcuugCGG- -5'
12910 5' -54.8 NC_003387.1 + 46765 0.67 0.685341
Target:  5'- aGCGGcacgaGguGCG-GCAGGGCGCCg -3'
miRNA:   3'- gCGUCuagg-UguCGCuCGUCUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.