miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 46078 0.66 0.707143
Target:  5'- aGCGGGUCgACGaCGAGCccaAGAcggcCGCCg -3'
miRNA:   3'- gCGUCUAGgUGUcGCUCG---UCUu---GCGG- -5'
12910 5' -54.8 NC_003387.1 + 45915 0.7 0.489469
Target:  5'- gCGCAGGaucUCCGCGGCGucgucGCGGGccaucaGCCg -3'
miRNA:   3'- -GCGUCU---AGGUGUCGCu----CGUCUug----CGG- -5'
12910 5' -54.8 NC_003387.1 + 45856 0.72 0.356586
Target:  5'- uCGCGGccugCgcaGCGGCGGGCAG-GCGCCa -3'
miRNA:   3'- -GCGUCua--Gg--UGUCGCUCGUCuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 45514 0.71 0.44898
Target:  5'- gCGCAGG-CC-CGGCGAGCuu-GCGCa -3'
miRNA:   3'- -GCGUCUaGGuGUCGCUCGucuUGCGg -5'
12910 5' -54.8 NC_003387.1 + 45511 0.7 0.489469
Target:  5'- uGCaAGggCCGCAGCGAGCuGAcgguguGCugGCCg -3'
miRNA:   3'- gCG-UCuaGGUGUCGCUCGuCU------UG--CGG- -5'
12910 5' -54.8 NC_003387.1 + 45033 0.69 0.520923
Target:  5'- uCGCGGccugagCCGCGGCcuGAGCcuucgcGAGCGCCu -3'
miRNA:   3'- -GCGUCua----GGUGUCG--CUCGu-----CUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 44833 0.71 0.42944
Target:  5'- gGCcGcUUCACGGCGGGCGGGugcugcgcuucgGCGCCc -3'
miRNA:   3'- gCGuCuAGGUGUCGCUCGUCU------------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 44517 0.68 0.574937
Target:  5'- gCGCAGcgCCucgugcgcguCGGCGGGCAGcauCGCg -3'
miRNA:   3'- -GCGUCuaGGu---------GUCGCUCGUCuu-GCGg -5'
12910 5' -54.8 NC_003387.1 + 44475 0.69 0.542323
Target:  5'- aGCGucagCCGCGGCGAGCuu--CGCCu -3'
miRNA:   3'- gCGUcua-GGUGUCGCUCGucuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 42232 0.67 0.641205
Target:  5'- aGCuccucGAUCgACAGCGGGCcac-CGCCg -3'
miRNA:   3'- gCGu----CUAGgUGUCGCUCGucuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 42199 0.68 0.59693
Target:  5'- gGCGGGcgUGC-GCGAGCAGGACGgCg -3'
miRNA:   3'- gCGUCUagGUGuCGCUCGUCUUGCgG- -5'
12910 5' -54.8 NC_003387.1 + 41958 0.69 0.520923
Target:  5'- uGCAGG-CCGcCAGCGAggagcugcgcGCGGAGgcCGCCg -3'
miRNA:   3'- gCGUCUaGGU-GUCGCU----------CGUCUU--GCGG- -5'
12910 5' -54.8 NC_003387.1 + 41294 0.68 0.630124
Target:  5'- cCGCGGAguugCCgugcuuauucggGCAGCG-GUAGugcACGCCg -3'
miRNA:   3'- -GCGUCUa---GG------------UGUCGCuCGUCu--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 40922 0.69 0.542323
Target:  5'- gGCGGuggCCugauggACGGCGAGCuGGuCGCCa -3'
miRNA:   3'- gCGUCua-GG------UGUCGCUCGuCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 39214 0.66 0.74976
Target:  5'- cCGCGG-UCgGgCAGUggGAGCGGGuaccgGCGCCg -3'
miRNA:   3'- -GCGUCuAGgU-GUCG--CUCGUCU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 38941 0.71 0.41986
Target:  5'- cCGCuGAUCUGCGGCGAcGC-GAAuUGCCg -3'
miRNA:   3'- -GCGuCUAGGUGUCGCU-CGuCUU-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 38704 0.66 0.738202
Target:  5'- uGCAGcgCCAgcgcggcCuGCGGGCcGAacaGCGCCu -3'
miRNA:   3'- gCGUCuaGGU-------GuCGCUCGuCU---UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 37992 0.67 0.641205
Target:  5'- gGCGGugccgagCCAC-GCGGGCAGcggguCGCCc -3'
miRNA:   3'- gCGUCua-----GGUGuCGCUCGUCuu---GCGG- -5'
12910 5' -54.8 NC_003387.1 + 37798 0.69 0.553134
Target:  5'- gCGCAGcacCCGCGGuCGcAGCAGcGCGCg -3'
miRNA:   3'- -GCGUCua-GGUGUC-GC-UCGUCuUGCGg -5'
12910 5' -54.8 NC_003387.1 + 37421 0.67 0.663332
Target:  5'- cCGCAGAUagcgcagcCCGCGGCGGGggcucguccaCGGcACGUCg -3'
miRNA:   3'- -GCGUCUA--------GGUGUCGCUC----------GUCuUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.