Results 41 - 60 of 152 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 37348 | 0.66 | 0.716862 |
Target: 5'- cCGCGGGcugcgcuaUCUGCGGCaccugucGGGCGGcGGCGCCc -3' miRNA: 3'- -GCGUCU--------AGGUGUCG-------CUCGUC-UUGCGG- -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 36955 | 0.66 | 0.739258 |
Target: 5'- aCGCGGugcCCGuCGGCGAGCAcAAuCGUCu -3' miRNA: 3'- -GCGUCua-GGU-GUCGCUCGUcUU-GCGG- -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 36743 | 0.7 | 0.504043 |
Target: 5'- aCGCGG--CCAgguCGGCGAGCcggugaugccacucgGGGGCGCCg -3' miRNA: 3'- -GCGUCuaGGU---GUCGCUCG---------------UCUUGCGG- -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 36692 | 0.71 | 0.439148 |
Target: 5'- uCGCGGcggCCAgCAgccGCGAGUcGAACGCCg -3' miRNA: 3'- -GCGUCua-GGU-GU---CGCUCGuCUUGCGG- -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 36528 | 0.66 | 0.696273 |
Target: 5'- gGCuGcgCCugGGCGAGCuGcuCGCg -3' miRNA: 3'- gCGuCuaGGugUCGCUCGuCuuGCGg -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 36244 | 0.71 | 0.438172 |
Target: 5'- gGCAGAUCgggGCGGUGAGCAuccggccGAcCGCCu -3' miRNA: 3'- gCGUCUAGg--UGUCGCUCGU-------CUuGCGG- -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 36001 | 0.71 | 0.42944 |
Target: 5'- gGCAcGAUCgACGGCGAggucGUGGuGCGCCg -3' miRNA: 3'- gCGU-CUAGgUGUCGCU----CGUCuUGCGG- -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 35332 | 0.68 | 0.630124 |
Target: 5'- cCGCGGcgCCAguugucguCGGCGuacuuGCGG-GCGCCg -3' miRNA: 3'- -GCGUCuaGGU--------GUCGCu----CGUCuUGCGG- -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 34692 | 0.66 | 0.707143 |
Target: 5'- gCGCAGGUagGCGGCcaugccGguGAAUGCCg -3' miRNA: 3'- -GCGUCUAggUGUCGcu----CguCUUGCGG- -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 34579 | 0.74 | 0.292864 |
Target: 5'- uCGCGGcgCCGCAGCG-GCGG-GCGUa -3' miRNA: 3'- -GCGUCuaGGUGUCGCuCGUCuUGCGg -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 34396 | 0.66 | 0.739258 |
Target: 5'- gCGaCGGGUCgGCcGCGGGCAGcGCGg- -3' miRNA: 3'- -GC-GUCUAGgUGuCGCUCGUCuUGCgg -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 34095 | 0.75 | 0.23839 |
Target: 5'- uGCGGGUCgCGCAGCGc-CAGGGCGCg -3' miRNA: 3'- gCGUCUAG-GUGUCGCucGUCUUGCGg -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 34005 | 0.66 | 0.732904 |
Target: 5'- uCGgGGAaCCACAgcucggggucgguuuGCGcGCAGAuCGCCg -3' miRNA: 3'- -GCgUCUaGGUGU---------------CGCuCGUCUuGCGG- -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 33344 | 0.77 | 0.203312 |
Target: 5'- uCGgGGAUCgGCGGCaggccGGGCAGGACGUCg -3' miRNA: 3'- -GCgUCUAGgUGUCG-----CUCGUCUUGCGG- -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 33196 | 0.74 | 0.281239 |
Target: 5'- uGCGGAUCgCGCAGCGcaAGCGcgaggcccgcucggcGAugGCCg -3' miRNA: 3'- gCGUCUAG-GUGUCGC--UCGU---------------CUugCGG- -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 32928 | 0.67 | 0.674357 |
Target: 5'- gCGCAGu----CGGCGAcGCGGAAcCGCCc -3' miRNA: 3'- -GCGUCuagguGUCGCU-CGUCUU-GCGG- -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 32849 | 0.68 | 0.619045 |
Target: 5'- gGCGGua-CGCGGCGGGUGGuuGCGCa -3' miRNA: 3'- gCGUCuagGUGUCGCUCGUCu-UGCGg -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 32005 | 0.66 | 0.706059 |
Target: 5'- gCGCGGAUCUGCucGGUgagccaccgcucgGAGCAGGggauACGUCg -3' miRNA: 3'- -GCGUCUAGGUG--UCG-------------CUCGUCU----UGCGG- -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 31927 | 0.69 | 0.553134 |
Target: 5'- aGCGGuggCUAC--CGAGCAGAuccGCGCCg -3' miRNA: 3'- gCGUCua-GGUGucGCUCGUCU---UGCGG- -5' |
|||||||
12910 | 5' | -54.8 | NC_003387.1 | + | 31726 | 0.68 | 0.574937 |
Target: 5'- gCGCAGGUCgCA-GGCGAGUuaGGggUGUCc -3' miRNA: 3'- -GCGUCUAG-GUgUCGCUCG--UCuuGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home